Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5114

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
6,065,003	+				+1.3
6,065,012	-				-0.1
6,065,116	-				+1.4
6,065,123	+				-1.1
6,065,123	+				-1.5
6,065,123	+				-0.1
6,065,150	+				+0.0
6,065,151	-				+0.4
6,065,155	+				+0.9
6,065,155	+				+1.0
6,065,155	+				-0.1
6,065,155	+				-2.1
6,065,156	-				-0.1
6,065,156	-				+0.8
6,065,161	+				+0.1
6,065,173	+				+0.7
6,065,173	+				-0.0
6,065,173	+				+1.6
6,065,173	+				+0.9
6,065,174	-				-0.7
6,065,174	-				+1.3
6,065,174	-				+1.7
6,065,261	+				+0.7
6,065,261	+				-1.0
6,065,261	+				-0.1
6,065,262	-				-0.4
6,065,282	+				-0.9
6,065,282	+				+0.8
6,065,283	-				+0.2
6,065,283	-				-0.3
6,065,283	-				-0.4
6,065,398	+				-0.7
6,065,398	+				+1.5
6,065,399	-				-0.9
6,065,399	-				-0.6
6,065,450	+				+2.1
6,065,450	+				+0.2
6,065,450	+				+0.4
6,065,451	-				+1.0
6,065,462	+				-0.3
6,065,462	+				-1.1
6,065,462	+				+1.0
6,065,462	+				-1.9
6,065,462	+				-0.8
6,065,462	+				-1.7
6,065,462	+				+0.6
6,065,462	+				-1.5
6,065,463	-				+0.1
6,065,463	-				-0.1
6,065,463	-				+1.1
6,065,463	-				-0.7
6,065,463	-				+0.5
6,065,463	-				+0.2
6,065,463	-				-1.7
6,065,463	-				-0.7
6,065,463	-				+0.1
6,065,484	+				-3.3
6,065,484	+				+0.1
6,065,484	+				-0.0
6,065,484	+				-0.6
6,065,484	+				+0.1
6,065,484	+				-0.6
6,065,484	+				+0.6
6,065,484	+				+1.1
6,065,484	+				-0.4
6,065,484	+				-0.8
6,065,484	+				-0.6
6,065,484	+				+0.8
6,065,484	+				-1.7
6,065,484	+				-2.8
6,065,484	+				-0.3
6,065,484	+				-1.3
6,065,484	+				-1.2
6,065,484	+				-0.1
6,065,485	-				+1.1
6,065,485	-				-0.6
6,065,485	-				-1.3
6,065,485	-				+1.1
6,065,485	-				-2.1
6,065,485	-				+0.1
6,065,485	-				+1.4
6,065,485	-				+1.0
6,065,485	-				-0.1
6,065,485	-				-0.4
6,065,485	-				+0.7
6,065,485	-				+1.3
6,065,485	-				-0.4
6,065,485	-				+0.5
6,065,485	-				-2.9
6,065,503	+				-2.3
6,065,503	+				+0.4
6,065,503	+				-0.3
6,065,504	-				-2.4
6,065,504	-				-0.3
6,065,693	-		Psyr_5113	0.48	+0.8
6,065,714	-		Psyr_5113	0.53	-0.5
6,065,714	-		Psyr_5113	0.53	+2.3
6,065,773	-		Psyr_5113	0.67	+1.1
6,065,779	+		Psyr_5113	0.69	-2.6
6,065,779	+		Psyr_5113	0.69	+0.8
6,065,779	+		Psyr_5113	0.69	-0.7
6,065,779	+		Psyr_5113	0.69	+2.2
6,065,779	+		Psyr_5113	0.69	+0.7
6,065,779	+		Psyr_5113	0.69	+0.3
6,065,779	+		Psyr_5113	0.69	-0.3
6,065,779	+		Psyr_5113	0.69	+1.6
6,065,779	+		Psyr_5113	0.69	-2.0
6,065,779	+		Psyr_5113	0.69	+0.7
6,065,779	+		Psyr_5113	0.69	-0.2
6,065,779	+		Psyr_5113	0.69	+1.5
6,065,779	+		Psyr_5113	0.69	-0.4
6,065,779	+		Psyr_5113	0.69	-1.3
6,065,779	+		Psyr_5113	0.69	+1.1
6,065,779	+		Psyr_5113	0.69	-0.7
6,065,779	+		Psyr_5113	0.69	+0.6
6,065,780	-		Psyr_5113	0.69	+0.3
6,065,780	-		Psyr_5113	0.69	+0.3
6,065,780	-		Psyr_5113	0.69	-0.4
6,065,780	-		Psyr_5113	0.69	-2.4
6,065,780	-		Psyr_5113	0.69	+1.6
6,065,780	-		Psyr_5113	0.69	+2.2
6,065,780	-		Psyr_5113	0.69	+0.3
6,065,780	-		Psyr_5113	0.69	+0.8
6,065,780	-		Psyr_5113	0.69	-2.0
6,065,780	-		Psyr_5113	0.69	+1.2
6,065,780	-		Psyr_5113	0.69	+1.0
6,065,780	-		Psyr_5113	0.69	+0.5
6,065,780	-		Psyr_5113	0.69	-0.3
6,065,780	-		Psyr_5113	0.69	+0.3
6,065,780	-		Psyr_5113	0.69	+0.4
6,065,780	-		Psyr_5113	0.69	+0.6
6,065,780	-		Psyr_5113	0.69	-1.7
6,065,780	-		Psyr_5113	0.69	+0.4
6,065,780	-		Psyr_5113	0.69	+0.1
6,065,780	-		Psyr_5113	0.69	+0.4
6,065,780	-		Psyr_5113	0.69	-1.5
6,065,800	+		Psyr_5113	0.74	-0.1
6,065,801	-		Psyr_5113	0.74	-1.1
6,065,801	-		Psyr_5113	0.74	+1.0
6,065,801	-		Psyr_5113	0.74	+0.3
6,065,903	+				+0.8
6,065,903	+				+0.9
6,065,903	+				-2.1
6,065,908	-				+1.5
6,065,957	+				+0.8
6,065,957	+				-0.0
6,065,957	+				-0.1
6,065,957	+				+3.6
6,065,957	+				+0.7
6,065,958	-				-2.1
6,065,958	-				+0.2
6,065,978	+				-1.3
6,065,978	+				-0.2
6,065,978	+				-1.5
6,065,979	-				-1.4
6,065,979	-				-0.1
6,065,979	-				-0.7
6,065,979	-				+1.4
6,065,979	-				-0.1
6,065,984	+				+0.1
6,065,985	-				+1.0
6,066,077	-		Psyr_5114	0.12	+0.4
6,066,080	-		Psyr_5114	0.12	+1.2
6,066,110	+		Psyr_5114	0.14	+1.3
6,066,110	+		Psyr_5114	0.14	-1.1
6,066,111	-		Psyr_5114	0.14	-0.9
6,066,111	-		Psyr_5114	0.14	+4.9
6,066,111	-		Psyr_5114	0.14	-0.4
6,066,111	-		Psyr_5114	0.14	-0.4
6,066,111	-		Psyr_5114	0.14	+0.7
6,066,111	-		Psyr_5114	0.14	+0.4
6,066,113	+		Psyr_5114	0.14	+0.3
6,066,114	-		Psyr_5114	0.14	+0.8
6,066,114	-		Psyr_5114	0.14	-0.3
6,066,114	-		Psyr_5114	0.14	+0.1
6,066,170	+		Psyr_5114	0.18	+0.1
6,066,179	-		Psyr_5114	0.19	+0.3
6,066,200	+		Psyr_5114	0.20	-2.3
6,066,213	+		Psyr_5114	0.21	+0.6
6,066,213	+		Psyr_5114	0.21	-2.4
6,066,228	+		Psyr_5114	0.22	+0.3
6,066,230	+		Psyr_5114	0.22	-0.5
6,066,231	-		Psyr_5114	0.23	-2.8
6,066,295	-		Psyr_5114	0.27	+1.0
6,066,303	+		Psyr_5114	0.28	-2.7
6,066,304	-		Psyr_5114	0.28	+0.8
6,066,304	-		Psyr_5114	0.28	-2.3
6,066,341	-		Psyr_5114	0.30	+0.3
6,066,353	+		Psyr_5114	0.31	+0.0
6,066,354	-		Psyr_5114	0.31	+0.0
6,066,384	+		Psyr_5114	0.33	-0.1
6,066,384	+		Psyr_5114	0.33	+1.4
6,066,384	+		Psyr_5114	0.33	+0.6
6,066,384	+		Psyr_5114	0.33	+1.5
6,066,395	+		Psyr_5114	0.34	-1.5
6,066,427	+		Psyr_5114	0.36	-0.1
6,066,427	+		Psyr_5114	0.36	+1.1
6,066,427	+		Psyr_5114	0.36	+0.4
6,066,427	+		Psyr_5114	0.36	-1.1
6,066,427	+		Psyr_5114	0.36	-4.0
6,066,427	+		Psyr_5114	0.36	-0.6
6,066,427	+		Psyr_5114	0.36	-0.8
6,066,428	-		Psyr_5114	0.37	+2.6
6,066,428	-		Psyr_5114	0.37	-1.0
6,066,428	-		Psyr_5114	0.37	-0.6
6,066,428	-		Psyr_5114	0.37	-2.1
6,066,428	-		Psyr_5114	0.37	+1.9
6,066,428	-		Psyr_5114	0.37	-0.6
6,066,429	+		Psyr_5114	0.37	+0.4
6,066,429	+		Psyr_5114	0.37	-0.9
6,066,429	+		Psyr_5114	0.37	+1.0
6,066,429	+		Psyr_5114	0.37	+0.1
6,066,429	+		Psyr_5114	0.37	-1.5
6,066,430	-		Psyr_5114	0.37	-1.9
6,066,430	-		Psyr_5114	0.37	+1.6
6,066,430	-		Psyr_5114	0.37	+1.3
6,066,430	-		Psyr_5114	0.37	-0.1
6,066,430	-		Psyr_5114	0.37	+1.5
6,066,430	-		Psyr_5114	0.37	+0.6
6,066,430	-		Psyr_5114	0.37	+0.6
6,066,430	-		Psyr_5114	0.37	-1.9
6,066,431	+		Psyr_5114	0.37	-1.5
6,066,431	+		Psyr_5114	0.37	+0.1
6,066,431	+		Psyr_5114	0.37	+0.4
6,066,455	+		Psyr_5114	0.38	-0.0
6,066,456	-		Psyr_5114	0.39	+1.9
6,066,456	-		Psyr_5114	0.39	+0.9
6,066,456	-		Psyr_5114	0.39	+1.1
6,066,461	-		Psyr_5114	0.39	+1.0
6,066,499	+		Psyr_5114	0.42	-1.8
6,066,503	+		Psyr_5114	0.42	-0.0
6,066,503	+		Psyr_5114	0.42	+0.4
6,066,504	-		Psyr_5114	0.42	-0.5
6,066,504	-		Psyr_5114	0.42	+0.9
6,066,504	-		Psyr_5114	0.42	+0.7
6,066,504	-		Psyr_5114	0.42	-1.7
6,066,504	-		Psyr_5114	0.42	+0.7
6,066,504	-		Psyr_5114	0.42	-0.0
6,066,504	-		Psyr_5114	0.42	+0.7
6,066,567	+		Psyr_5114	0.46	-0.0
6,066,568	-		Psyr_5114	0.47	+0.2
6,066,620	+		Psyr_5114	0.50	+0.9
6,066,636	+		Psyr_5114	0.51	-0.8
6,066,637	-		Psyr_5114	0.51	-0.3
6,066,651	+		Psyr_5114	0.52	-2.2
6,066,651	+		Psyr_5114	0.52	+0.3
6,066,677	+		Psyr_5114	0.54	-0.2
6,066,829	+		Psyr_5114	0.65	-0.3
6,066,834	-		Psyr_5114	0.65	+0.8
6,066,844	+		Psyr_5114	0.66	+0.2
6,066,853	+		Psyr_5114	0.67	-0.4
6,066,853	+		Psyr_5114	0.67	+0.9
6,066,854	-		Psyr_5114	0.67	+0.1
6,066,865	+		Psyr_5114	0.68	-1.7
6,066,865	+		Psyr_5114	0.68	-0.9
6,066,917	-		Psyr_5114	0.71	-0.9
6,066,935	-		Psyr_5114	0.73	-0.4
6,066,935	-		Psyr_5114	0.73	-0.7
6,066,945	+		Psyr_5114	0.73	-0.1
6,066,978	+		Psyr_5114	0.76	+0.4
6,066,981	+		Psyr_5114	0.76	+1.0
6,067,059	-		Psyr_5114	0.81	-0.3
6,067,061	-		Psyr_5114	0.82	-1.8
6,067,113	+		Psyr_5114	0.85	-0.2
6,067,117	-		Psyr_5114	0.86	+0.4
6,067,185	+				-0.3
6,067,186	-				+0.0
6,067,215	+				-0.9
6,067,305	+				-0.3
6,067,308	+				+0.3
6,067,308	+				-1.3
6,067,308	+				-1.5
6,067,309	-				+0.4
6,067,309	-				-1.0
6,067,309	-				-0.3
6,067,309	-				+1.1
6,067,309	-				-0.6
6,067,312	+				+1.2
6,067,312	+				+0.4
6,067,312	+				-0.0
6,067,312	+				+2.9
6,067,312	+				-0.5
6,067,312	+				-0.4
6,067,313	-				-1.3
6,067,321	-				+0.3
6,067,325	+				-0.3
6,067,325	+				-0.7
6,067,325	+				-0.0
6,067,435	+				+0.2
6,067,436	-				-0.7
6,067,495	+				+0.7
6,067,495	+				+0.3
6,067,496	-				-2.3
6,067,496	-				+1.2
6,067,496	-				-1.2
6,067,500	+				+0.6
6,067,501	-				+0.3
6,067,529	-				+1.6
6,067,529	-				+0.1
6,067,538	+				+0.2
6,067,539	-				-0.1
6,067,586	+				-0.3
6,067,586	+				+0.6
6,067,587	-				-0.9
6,067,590	+				+0.8
6,067,591	-				+0.9
6,067,591	-				+0.2
6,067,591	-				+0.1
6,067,635	+				+0.6
6,067,635	+				-0.8
6,067,636	-				-0.4
6,067,645	+				-0.8
6,067,645	+				+0.1
6,067,651	+				+0.4
6,067,651	+				-1.4
6,067,708	-				+0.0
6,067,732	+				+1.5
6,067,775	+				-0.4
6,067,775	+				+1.0
6,067,816	+				+0.7
6,067,825	+				-0.6
6,067,861	-				-0.5
6,067,904	-				-0.6
6,067,904	-				+3.5
6,067,919	+				+0.6
6,067,919	+				+2.4
6,067,919	+				-0.1
6,067,919	+				-1.3
6,067,920	-				+0.7
6,067,920	-				+1.3
6,067,920	-				+0.7
6,067,920	-				-0.1
6,067,984	+		Psyr_5115	0.11	+0.9
6,067,984	+		Psyr_5115	0.11	+1.7
6,068,025	+		Psyr_5115	0.12	+0.7
6,068,095	+		Psyr_5115	0.14	+0.6
6,068,159	-		Psyr_5115	0.15	-0.0
6,068,215	+		Psyr_5115	0.17	+1.5
6,068,215	+		Psyr_5115	0.17	-1.9
6,068,215	+		Psyr_5115	0.17	-0.1
6,068,215	+		Psyr_5115	0.17	+0.4
6,068,215	+		Psyr_5115	0.17	+0.5
6,068,215	+		Psyr_5115	0.17	-0.4
6,068,215	+		Psyr_5115	0.17	+0.4
6,068,215	+		Psyr_5115	0.17	+1.1
6,068,215	+		Psyr_5115	0.17	-1.3
6,068,215	+		Psyr_5115	0.17	+0.2
6,068,216	-		Psyr_5115	0.17	+0.2
6,068,216	-		Psyr_5115	0.17	+1.2
6,068,216	-		Psyr_5115	0.17	-0.9
6,068,216	-		Psyr_5115	0.17	-0.1
6,068,216	-		Psyr_5115	0.17	+1.0
6,068,216	-		Psyr_5115	0.17	-2.9
6,068,216	-		Psyr_5115	0.17	-0.4