Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4889

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,798,785	+		Psyr_4888	0.12	-0.7
5,798,786	-		Psyr_4888	0.12	+1.1
5,799,125	+		Psyr_4888	0.55	-1.3
5,799,125	+		Psyr_4888	0.55	+0.5
5,799,126	-		Psyr_4888	0.55	-1.5
5,799,126	-		Psyr_4888	0.55	-0.4
5,799,227	+		Psyr_4888	0.68	-1.6
5,799,227	+		Psyr_4888	0.68	+0.6
5,799,227	+		Psyr_4888	0.68	+0.8
5,799,227	+		Psyr_4888	0.68	+0.8
5,799,227	+		Psyr_4888	0.68	-0.3
5,799,228	-		Psyr_4888	0.68	+0.7
5,799,228	-		Psyr_4888	0.68	+1.7
5,799,228	-		Psyr_4888	0.68	+0.6
5,799,228	-		Psyr_4888	0.68	-0.4
5,799,228	-		Psyr_4888	0.68	-0.0
5,799,301	+		Psyr_4888	0.78	-2.5
5,799,301	+		Psyr_4888	0.78	+0.1
5,799,302	-		Psyr_4888	0.78	-0.4
5,799,302	-		Psyr_4888	0.78	-0.0
5,799,350	+		Psyr_4888	0.84	-0.7
5,799,466	+				+1.3
5,799,513	+				+0.0
5,799,513	+				+0.3
5,799,514	-				+0.5
5,799,514	-				+1.8
5,799,547	+				+0.7
5,799,547	+				+0.3
5,799,563	+				+0.2
5,799,617	+				-0.1
5,799,618	-				+1.5
5,799,642	+				+0.1
5,799,643	-				+2.7
5,799,643	-				+0.1
5,799,677	+				-1.0
5,799,678	-				+0.2
5,799,678	-				-1.7
5,799,678	-				+1.9
5,799,678	-				-1.3
5,799,848	+				+1.2
5,799,849	-				+0.9
5,799,892	+				-1.9
5,799,893	-				+0.9
5,799,972	-		Psyr_4889	0.13	+0.6
5,799,997	+		Psyr_4889	0.15	-0.9
5,799,997	+		Psyr_4889	0.15	-0.1
5,800,004	+		Psyr_4889	0.15	-0.3
5,800,005	-		Psyr_4889	0.15	-3.1
5,800,134	+		Psyr_4889	0.22	-0.6
5,800,134	+		Psyr_4889	0.22	-3.1
5,800,140	+		Psyr_4889	0.23	+0.0
5,800,240	+		Psyr_4889	0.28	+0.9
5,800,274	+		Psyr_4889	0.30	-0.9
5,800,287	+		Psyr_4889	0.31	+0.5
5,800,303	+		Psyr_4889	0.32	-0.4
5,800,303	+		Psyr_4889	0.32	+1.7
5,800,303	+		Psyr_4889	0.32	-2.1
5,800,303	+		Psyr_4889	0.32	-1.4
5,800,303	+		Psyr_4889	0.32	+1.4
5,800,304	-		Psyr_4889	0.32	+0.3
5,800,304	-		Psyr_4889	0.32	+1.0
5,800,304	-		Psyr_4889	0.32	-1.1
5,800,304	-		Psyr_4889	0.32	-1.7
5,800,304	-		Psyr_4889	0.32	+1.2
5,800,304	-		Psyr_4889	0.32	-0.2
5,800,304	-		Psyr_4889	0.32	-0.4
5,800,350	+		Psyr_4889	0.34	+0.5
5,800,350	+		Psyr_4889	0.34	-0.6
5,800,351	-		Psyr_4889	0.34	+2.9
5,800,403	+		Psyr_4889	0.37	-2.1
5,800,403	+		Psyr_4889	0.37	+1.5
5,800,404	-		Psyr_4889	0.37	+0.6
5,800,404	-		Psyr_4889	0.37	-1.0
5,800,417	+		Psyr_4889	0.38	+0.3
5,800,583	+		Psyr_4889	0.47	-1.1
5,800,584	-		Psyr_4889	0.47	+1.0
5,800,584	-		Psyr_4889	0.47	+0.3
5,800,590	+		Psyr_4889	0.47	+1.6
5,800,652	+		Psyr_4889	0.51	-1.5
5,800,652	+		Psyr_4889	0.51	-1.9
5,800,653	-		Psyr_4889	0.51	-0.2
5,800,653	-		Psyr_4889	0.51	-0.9
5,800,662	+		Psyr_4889	0.51	+0.2
5,800,663	-		Psyr_4889	0.51	-0.0
5,800,663	-		Psyr_4889	0.51	+3.3
5,800,693	+		Psyr_4889	0.53	+0.1
5,800,694	-		Psyr_4889	0.53	-0.3
5,800,694	-		Psyr_4889	0.53	+2.0
5,800,694	-		Psyr_4889	0.53	+0.5
5,800,696	+		Psyr_4889	0.53	-0.8
5,800,696	+		Psyr_4889	0.53	+1.2
5,800,696	+		Psyr_4889	0.53	+0.6
5,800,696	+		Psyr_4889	0.53	-0.1
5,800,696	+		Psyr_4889	0.53	+1.3
5,800,696	+		Psyr_4889	0.53	-0.1
5,800,696	+		Psyr_4889	0.53	+0.5
5,800,696	+		Psyr_4889	0.53	-0.2
5,800,697	-		Psyr_4889	0.53	-0.6
5,800,697	-		Psyr_4889	0.53	-3.1
5,800,697	-		Psyr_4889	0.53	+1.1
5,800,697	-		Psyr_4889	0.53	-2.5
5,800,697	-		Psyr_4889	0.53	+0.7
5,800,697	-		Psyr_4889	0.53	+0.8
5,800,697	-		Psyr_4889	0.53	+0.2
5,800,697	-		Psyr_4889	0.53	+1.6
5,800,697	-		Psyr_4889	0.53	-1.4
5,800,697	-		Psyr_4889	0.53	-2.0
5,800,697	-		Psyr_4889	0.53	+0.1
5,800,711	-		Psyr_4889	0.54	-1.1
5,800,739	+		Psyr_4889	0.55	+0.3
5,800,739	+		Psyr_4889	0.55	+1.4
5,800,740	-		Psyr_4889	0.56	-0.1
5,800,740	-		Psyr_4889	0.56	-0.3
5,800,740	-		Psyr_4889	0.56	+0.7
5,800,740	-		Psyr_4889	0.56	+1.4
5,800,781	+		Psyr_4889	0.58	-2.0
5,800,781	+		Psyr_4889	0.58	-1.0
5,800,781	+		Psyr_4889	0.58	+0.6
5,800,781	+		Psyr_4889	0.58	-0.6
5,800,781	+		Psyr_4889	0.58	-1.5
5,800,781	+		Psyr_4889	0.58	-1.3
5,800,781	+		Psyr_4889	0.58	+0.6
5,800,781	+		Psyr_4889	0.58	+0.9
5,800,781	+		Psyr_4889	0.58	-2.2
5,800,781	+		Psyr_4889	0.58	-0.4
5,800,781	+		Psyr_4889	0.58	-0.5
5,800,781	+		Psyr_4889	0.58	+0.0
5,800,781	+		Psyr_4889	0.58	+3.2
5,800,781	+		Psyr_4889	0.58	-0.4
5,800,781	+		Psyr_4889	0.58	+1.6
5,800,782	-		Psyr_4889	0.58	+1.3
5,800,782	-		Psyr_4889	0.58	-0.5
5,800,782	-		Psyr_4889	0.58	+2.2
5,800,782	-		Psyr_4889	0.58	+0.5
5,800,782	-		Psyr_4889	0.58	-0.1
5,800,782	-		Psyr_4889	0.58	+1.6
5,800,782	-		Psyr_4889	0.58	+0.2
5,800,782	-		Psyr_4889	0.58	-1.3
5,800,782	-		Psyr_4889	0.58	+0.7
5,800,782	-		Psyr_4889	0.58	-0.1
5,800,782	-		Psyr_4889	0.58	-0.9
5,800,782	-		Psyr_4889	0.58	+1.4
5,800,782	-		Psyr_4889	0.58	-0.2
5,800,784	+		Psyr_4889	0.58	-1.5
5,800,784	+		Psyr_4889	0.58	+1.2
5,800,784	+		Psyr_4889	0.58	-0.4
5,800,784	+		Psyr_4889	0.58	+1.1
5,800,784	+		Psyr_4889	0.58	+0.3
5,800,784	+		Psyr_4889	0.58	+0.3
5,800,785	-		Psyr_4889	0.58	-0.3
5,800,785	-		Psyr_4889	0.58	-1.6
5,800,785	-		Psyr_4889	0.58	-0.3
5,800,785	-		Psyr_4889	0.58	-0.7
5,800,842	-		Psyr_4889	0.61	+0.9
5,800,936	+		Psyr_4889	0.66	+0.7
5,800,936	+		Psyr_4889	0.66	-1.7
5,800,936	+		Psyr_4889	0.66	-2.0
5,800,936	+		Psyr_4889	0.66	-2.7
5,800,936	+		Psyr_4889	0.66	-0.5
5,800,936	+		Psyr_4889	0.66	-0.4
5,800,936	+		Psyr_4889	0.66	-1.9
5,800,936	+		Psyr_4889	0.66	+0.9
5,800,937	-		Psyr_4889	0.66	-0.3
5,800,937	-		Psyr_4889	0.66	-0.5
5,800,937	-		Psyr_4889	0.66	+0.8
5,800,937	-		Psyr_4889	0.66	-0.5
5,800,937	-		Psyr_4889	0.66	-0.3
5,801,034	-		Psyr_4889	0.72	-1.3
5,801,090	-		Psyr_4889	0.75	-0.0
5,801,101	+		Psyr_4889	0.75	-1.7
5,801,101	+		Psyr_4889	0.75	-1.0
5,801,101	+		Psyr_4889	0.75	+0.7
5,801,101	+		Psyr_4889	0.75	+0.9
5,801,101	+		Psyr_4889	0.75	+1.0
5,801,101	+		Psyr_4889	0.75	+0.9
5,801,102	-		Psyr_4889	0.75	+1.2
5,801,102	-		Psyr_4889	0.75	+0.3
5,801,102	-		Psyr_4889	0.75	+0.9
5,801,102	-		Psyr_4889	0.75	+0.4
5,801,102	-		Psyr_4889	0.75	+0.6
5,801,110	+		Psyr_4889	0.76	-0.4
5,801,111	-		Psyr_4889	0.76	+1.4
5,801,167	+		Psyr_4889	0.79	-0.0
5,801,167	+		Psyr_4889	0.79	+0.2
5,801,167	+		Psyr_4889	0.79	-2.4
5,801,167	+		Psyr_4889	0.79	-0.5
5,801,167	+		Psyr_4889	0.79	-0.1
5,801,167	+		Psyr_4889	0.79	+0.5
5,801,167	+		Psyr_4889	0.79	-1.3
5,801,167	+		Psyr_4889	0.79	-0.1
5,801,168	-		Psyr_4889	0.79	-0.3
5,801,168	-		Psyr_4889	0.79	-1.3
5,801,168	-		Psyr_4889	0.79	+0.0
5,801,168	-		Psyr_4889	0.79	+2.1
5,801,168	-		Psyr_4889	0.79	-0.8
5,801,168	-		Psyr_4889	0.79	-1.3
5,801,168	-		Psyr_4889	0.79	-3.1
5,801,168	-		Psyr_4889	0.79	+0.5
5,801,179	+		Psyr_4889	0.80	-1.0
5,801,179	+		Psyr_4889	0.80	+0.9
5,801,180	-		Psyr_4889	0.80	+0.5
5,801,180	-		Psyr_4889	0.80	+1.6
5,801,180	-		Psyr_4889	0.80	+0.3
5,801,180	-		Psyr_4889	0.80	+0.3
5,801,180	-		Psyr_4889	0.80	-0.3
5,801,180	-		Psyr_4889	0.80	-1.6
5,801,180	-		Psyr_4889	0.80	-0.6
5,801,185	+		Psyr_4889	0.80	+1.4
5,801,185	+		Psyr_4889	0.80	+1.1
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	+0.8
5,801,185	+		Psyr_4889	0.80	-0.0
5,801,185	+		Psyr_4889	0.80	+2.1
5,801,185	+		Psyr_4889	0.80	-2.8
5,801,185	+		Psyr_4889	0.80	-0.1
5,801,185	+		Psyr_4889	0.80	-0.4
5,801,185	+		Psyr_4889	0.80	+2.1
5,801,185	+		Psyr_4889	0.80	+2.6
5,801,185	+		Psyr_4889	0.80	-0.5
5,801,185	+		Psyr_4889	0.80	+0.3
5,801,185	+		Psyr_4889	0.80	-0.5
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	-2.3
5,801,185	+		Psyr_4889	0.80	+0.4
5,801,185	+		Psyr_4889	0.80	+0.3
5,801,185	+		Psyr_4889	0.80	-1.3
5,801,185	+		Psyr_4889	0.80	+1.3
5,801,185	+		Psyr_4889	0.80	+1.3
5,801,185	+		Psyr_4889	0.80	+1.6
5,801,185	+		Psyr_4889	0.80	-1.7
5,801,185	+		Psyr_4889	0.80	-0.3
5,801,185	+		Psyr_4889	0.80	-1.0
5,801,185	+		Psyr_4889	0.80	-0.4
5,801,185	+		Psyr_4889	0.80	+0.9
5,801,185	+		Psyr_4889	0.80	+1.6
5,801,185	+		Psyr_4889	0.80	+0.5
5,801,185	+		Psyr_4889	0.80	+1.3
5,801,185	+		Psyr_4889	0.80	+0.7
5,801,185	+		Psyr_4889	0.80	-0.7
5,801,185	+		Psyr_4889	0.80	-0.7
5,801,185	+		Psyr_4889	0.80	-0.1
5,801,185	+		Psyr_4889	0.80	+1.2
5,801,185	+		Psyr_4889	0.80	-0.6
5,801,185	+		Psyr_4889	0.80	+3.9
5,801,185	+		Psyr_4889	0.80	-1.6
5,801,185	+		Psyr_4889	0.80	-0.4
5,801,185	+		Psyr_4889	0.80	-0.4
5,801,185	+		Psyr_4889	0.80	+0.7
5,801,185	+		Psyr_4889	0.80	+1.6
5,801,185	+		Psyr_4889	0.80	+1.0
5,801,185	+		Psyr_4889	0.80	-1.8
5,801,185	+		Psyr_4889	0.80	-1.4
5,801,186	-		Psyr_4889	0.80	+0.7
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	+1.1
5,801,186	-		Psyr_4889	0.80	-2.6
5,801,186	-		Psyr_4889	0.80	-0.6
5,801,186	-		Psyr_4889	0.80	+2.5
5,801,186	-		Psyr_4889	0.80	-1.3
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	-2.3
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+1.3
5,801,186	-		Psyr_4889	0.80	+0.4
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	-0.9
5,801,186	-		Psyr_4889	0.80	+0.3
5,801,186	-		Psyr_4889	0.80	-1.4
5,801,186	-		Psyr_4889	0.80	+0.5
5,801,186	-		Psyr_4889	0.80	+0.2
5,801,186	-		Psyr_4889	0.80	-0.3
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+0.8
5,801,186	-		Psyr_4889	0.80	+0.4
5,801,186	-		Psyr_4889	0.80	+1.5
5,801,186	-		Psyr_4889	0.80	+0.4
5,801,186	-		Psyr_4889	0.80	-0.4
5,801,186	-		Psyr_4889	0.80	+0.2
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+0.8
5,801,186	-		Psyr_4889	0.80	-0.5
5,801,186	-		Psyr_4889	0.80	-1.1
5,801,186	-		Psyr_4889	0.80	-0.7
5,801,186	-		Psyr_4889	0.80	+2.9
5,801,186	-		Psyr_4889	0.80	-1.0
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	-0.8
5,801,186	-		Psyr_4889	0.80	+1.4
5,801,186	-		Psyr_4889	0.80	-0.9
5,801,186	-		Psyr_4889	0.80	-1.3
5,801,186	-		Psyr_4889	0.80	+1.4
5,801,186	-		Psyr_4889	0.80	-0.2
5,801,186	-		Psyr_4889	0.80	+2.4
5,801,186	-		Psyr_4889	0.80	+0.6
5,801,186	-		Psyr_4889	0.80	+0.4
5,801,186	-		Psyr_4889	0.80	+0.0
5,801,186	-		Psyr_4889	0.80	-1.7
5,801,186	-		Psyr_4889	0.80	-2.9
5,801,186	-		Psyr_4889	0.80	+0.5
5,801,186	-		Psyr_4889	0.80	+0.1
5,801,186	-		Psyr_4889	0.80	+1.3
5,801,186	-		Psyr_4889	0.80	+1.3
5,801,186	-		Psyr_4889	0.80	+2.1
5,801,186	-		Psyr_4889	0.80	-0.2
5,801,189	+		Psyr_4889	0.80	+1.9
5,801,189	+		Psyr_4889	0.80	+0.3
5,801,189	+		Psyr_4889	0.80	-2.0
5,801,189	+		Psyr_4889	0.80	-0.6
5,801,189	+		Psyr_4889	0.80	+1.0
5,801,189	+		Psyr_4889	0.80	+0.6
5,801,190	-		Psyr_4889	0.80	+2.7
5,801,190	-		Psyr_4889	0.80	-1.9
5,801,190	-		Psyr_4889	0.80	-1.0
5,801,190	-		Psyr_4889	0.80	+2.6
5,801,306	+		Psyr_4889	0.87	-0.2
5,801,306	+		Psyr_4889	0.87	+1.0
5,801,307	-		Psyr_4889	0.87	-1.4
5,801,338	+		Psyr_4889	0.88	-2.4
5,801,338	+		Psyr_4889	0.88	+0.2
5,801,338	+		Psyr_4889	0.88	-2.2
5,801,338	+		Psyr_4889	0.88	+0.1
5,801,338	+		Psyr_4889	0.88	-0.8
5,801,339	-		Psyr_4889	0.88	+0.7
5,801,339	-		Psyr_4889	0.88	+0.4
5,801,339	-		Psyr_4889	0.88	-0.6
5,801,339	-		Psyr_4889	0.88	-0.1
5,801,339	-		Psyr_4889	0.88	-0.4
5,801,339	-		Psyr_4889	0.88	-0.2
5,801,339	-		Psyr_4889	0.88	+0.4
5,801,339	-		Psyr_4889	0.88	+1.6
5,801,373	+				-0.7
5,801,373	+				+0.2
5,801,373	+				+0.3
5,801,373	+				+0.3
5,801,374	-				+1.2
5,801,374	-				+2.9
5,801,374	-				-1.3
5,801,377	+				-0.1
5,801,377	+				-0.5
5,801,377	+				+0.0
5,801,377	+				-1.0
5,801,378	-				-0.4
5,801,378	-				-0.5
5,801,378	-				+3.2
5,801,384	+				+0.3
5,801,412	+				-0.7
5,801,468	+				-0.6
5,801,468	+				-0.5
5,801,468	+				+0.4
5,801,468	+				-2.3
5,801,469	-				+0.7
5,801,469	-				+0.4
5,801,469	-				-0.9
5,801,469	-				+0.6
5,801,533	+				-0.3
5,801,534	-				-1.6
5,801,534	-				+0.7
5,801,534	-				-0.6
5,801,534	-				-1.3
5,801,581	+				+0.4
5,801,581	+				+1.6
5,801,581	+				+0.8
5,801,581	+				-0.0
5,801,581	+				+0.4
5,801,581	+				-0.1
5,801,581	+				+1.3
5,801,581	+				-0.6
5,801,581	+				+0.4
5,801,582	-				+0.7
5,801,582	-				+0.5
5,801,582	-				-0.1
5,801,582	-				+1.3
5,801,582	-				-1.2
5,801,582	-				-1.5
5,801,582	-				+0.5
5,801,582	-				+0.9
5,801,582	-				-0.5
5,801,585	+				+1.2
5,801,585	+				+0.0
5,801,585	+				+0.4
5,801,585	+				-1.9
5,801,585	+				+0.5
5,801,585	+				-2.3
5,801,585	+				-1.2
5,801,586	-				+0.3
5,801,586	-				+0.9
5,801,586	-				-1.1
5,801,586	-				-2.5
5,801,586	-				-0.5
5,801,586	-				-0.6
5,801,586	-				-0.8
5,801,586	-				+0.8
5,801,586	-				+1.6
5,801,593	+				+0.3
5,801,593	+				-0.5
5,801,594	-				+0.7
5,801,630	+				-1.1
5,801,630	+				+0.7
5,801,630	+				+0.2
5,801,631	-				+0.7
5,801,631	-				-0.1
5,801,631	-				+1.8
5,801,631	-				-0.8
5,801,631	-				-1.7
5,801,694	+				+0.2
5,801,734	-				-0.7
5,801,734	-				-0.1
5,801,734	-				+0.6
5,801,994	+		Psyr_4890	0.16	+0.3
5,801,994	+		Psyr_4890	0.16	+1.1
5,801,994	+		Psyr_4890	0.16	+0.7
5,801,994	+		Psyr_4890	0.16	+0.6
5,801,994	+		Psyr_4890	0.16	-0.0
5,801,994	+		Psyr_4890	0.16	-0.3
5,801,994	+		Psyr_4890	0.16	-0.7
5,801,994	+		Psyr_4890	0.16	+0.9
5,801,994	+		Psyr_4890	0.16	-0.4
5,801,998	+		Psyr_4890	0.17	-0.6
5,801,998	+		Psyr_4890	0.17	+0.8
5,801,998	+		Psyr_4890	0.17	+0.2
5,801,998	+		Psyr_4890	0.17	-0.1
5,801,998	+		Psyr_4890	0.17	-1.8
5,801,999	-		Psyr_4890	0.17	-1.2
5,801,999	-		Psyr_4890	0.17	-1.4
5,801,999	-		Psyr_4890	0.17	+0.6
5,801,999	-		Psyr_4890	0.17	-0.0
5,801,999	-		Psyr_4890	0.17	+1.8
5,802,017	+		Psyr_4890	0.18	+1.6
5,802,017	+		Psyr_4890	0.18	+0.1
5,802,018	-		Psyr_4890	0.18	+1.0
5,802,252	-		Psyr_4890	0.34	+0.3
5,802,363	-		Psyr_4890	0.41	-1.4
5,802,371	+		Psyr_4890	0.41	-2.1
5,802,441	+		Psyr_4890	0.46	-0.3
5,802,442	-		Psyr_4890	0.46	+0.2
5,802,442	-		Psyr_4890	0.46	+2.2
5,802,539	+		Psyr_4890	0.53	+1.3
5,802,539	+		Psyr_4890	0.53	-1.8
5,802,539	+		Psyr_4890	0.53	-0.2
5,802,540	-		Psyr_4890	0.53	+0.6
5,802,540	-		Psyr_4890	0.53	+0.5
5,802,540	-		Psyr_4890	0.53	-0.6
5,802,540	-		Psyr_4890	0.53	-1.6
5,802,543	+		Psyr_4890	0.53	-0.5
5,802,543	+		Psyr_4890	0.53	+0.5
5,802,543	+		Psyr_4890	0.53	-1.4
5,802,544	-		Psyr_4890	0.53	-1.9