Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4653

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,514,950	+		Psyr_4651	0.89	+1.9
5,514,951	-		Psyr_4651	0.89	-0.1
5,514,982	-				+1.2
5,514,994	-				-0.1
5,515,070	+				+0.9
5,515,116	+				+0.4
5,515,116	+				+0.1
5,515,138	-				+0.8
5,515,588	-				+0.1
5,515,596	+				+1.6
5,515,596	+				-0.0
5,515,600	+				-2.1
5,515,746	+				-1.9
5,515,746	+				+1.3
5,515,747	-				-0.4
5,515,765	-				+0.8
5,515,838	-				-1.4
5,515,861	+				+0.5
5,515,861	+				-0.2
5,515,862	-				-0.4
5,515,863	+				+0.1
5,515,863	+				-0.3
5,515,863	+				-1.2
5,515,864	-				+0.3
5,515,905	-				+0.0
5,515,905	-				+1.4
5,515,913	+				-2.7
5,515,913	+				-0.2
5,515,913	+				-2.7
5,515,913	+				-2.6
5,515,913	+				+0.3
5,515,914	-				+0.8
5,515,914	-				-2.1
5,515,914	-				+0.7
5,515,914	-				+1.0
5,515,914	-				-0.1
5,516,005	+		Psyr_4653	0.37	+0.2
5,516,006	-		Psyr_4653	0.38	+0.3
5,516,006	-		Psyr_4653	0.38	+0.4
5,516,006	-		Psyr_4653	0.38	-0.7
5,516,006	-		Psyr_4653	0.38	+3.9
5,516,006	-		Psyr_4653	0.38	+0.3
5,516,006	-		Psyr_4653	0.38	+1.1
5,516,006	-		Psyr_4653	0.38	+1.6
5,516,006	-		Psyr_4653	0.38	-1.9
5,516,102	+		Psyr_4653	0.76	+2.0
5,516,102	+		Psyr_4653	0.76	+0.7
5,516,103	-		Psyr_4653	0.77	-0.2
5,516,103	-		Psyr_4653	0.77	+0.8
5,516,103	-		Psyr_4653	0.77	+0.5
5,516,103	-		Psyr_4653	0.77	-1.7
5,516,103	-		Psyr_4653	0.77	+0.3
5,516,103	-		Psyr_4653	0.77	+0.6
5,516,103	-		Psyr_4653	0.77	+0.4
5,516,103	-		Psyr_4653	0.77	-1.0
5,516,103	-		Psyr_4653	0.77	+1.8
5,516,139	+				-0.2
5,516,139	+				+0.4
5,516,139	+				-0.4
5,516,139	+				+0.4
5,516,140	-				+2.4
5,516,202	+				-2.0
5,516,202	+				-1.5
5,516,202	+				+1.0
5,516,202	+				-2.4
5,516,202	+				+0.1
5,516,202	+				-2.4
5,516,202	+				+1.5
5,516,203	-				-0.2
5,516,203	-				+0.5
5,516,213	+				-0.2
5,516,273	+		Psyr_4654	0.24	+0.9
5,516,273	+		Psyr_4654	0.24	+0.2
5,516,273	+		Psyr_4654	0.24	+0.0
5,516,273	+		Psyr_4654	0.24	+0.1
5,516,273	+		Psyr_4654	0.24	-2.1
5,516,274	-		Psyr_4654	0.25	+0.3
5,516,274	-		Psyr_4654	0.25	+1.4
5,516,274	-		Psyr_4654	0.25	+1.0
5,516,274	-		Psyr_4654	0.25	+1.4
5,516,274	-		Psyr_4654	0.25	-0.1
5,516,280	+		Psyr_4654	0.27	+0.1
5,516,280	+		Psyr_4654	0.27	+2.0
5,516,280	+		Psyr_4654	0.27	-1.0
5,516,280	+		Psyr_4654	0.27	+0.4
5,516,280	+		Psyr_4654	0.27	+2.6
5,516,280	+		Psyr_4654	0.27	-0.2
5,516,280	+		Psyr_4654	0.27	+2.2
5,516,280	+		Psyr_4654	0.27	-1.4
5,516,280	+		Psyr_4654	0.27	+0.9
5,516,280	+		Psyr_4654	0.27	+0.1
5,516,281	-		Psyr_4654	0.27	+2.3
5,516,281	-		Psyr_4654	0.27	+0.7
5,516,281	-		Psyr_4654	0.27	-2.1
5,516,281	-		Psyr_4654	0.27	+0.1
5,516,281	-		Psyr_4654	0.27	-0.5
5,516,281	-		Psyr_4654	0.27	-1.9
5,516,281	-		Psyr_4654	0.27	+0.4
5,516,281	-		Psyr_4654	0.27	+0.2
5,516,314	+		Psyr_4654	0.40	+0.2
5,516,314	+		Psyr_4654	0.40	+0.0
5,516,314	+		Psyr_4654	0.40	-0.1
5,516,314	+		Psyr_4654	0.40	-0.8
5,516,315	-		Psyr_4654	0.41	-1.6
5,516,315	-		Psyr_4654	0.41	+0.4
5,516,315	-		Psyr_4654	0.41	-0.6
5,516,315	-		Psyr_4654	0.41	-3.1
5,516,315	-		Psyr_4654	0.41	-0.7
5,516,315	-		Psyr_4654	0.41	+0.2
5,516,315	-		Psyr_4654	0.41	-0.8
5,516,465	+				+0.9
5,516,465	+				+1.1
5,516,465	+				-0.5
5,516,465	+				+1.9
5,516,465	+				+0.2
5,516,465	+				+0.6
5,516,465	+				+1.8
5,516,465	+				-1.4
5,516,465	+				+0.1
5,516,465	+				-0.1
5,516,465	+				+1.8
5,516,465	+				+1.5
5,516,465	+				+0.1
5,516,465	+				-1.0
5,516,465	+				-1.0
5,516,465	+				+0.5
5,516,465	+				-0.1
5,516,466	-				+1.0
5,516,466	-				+0.4
5,516,466	-				+0.2
5,516,466	-				+0.2
5,516,466	-				-1.1
5,516,466	-				+0.9
5,516,466	-				-0.8
5,516,466	-				-0.4
5,516,466	-				-1.9
5,516,466	-				+0.8
5,516,466	-				-0.2
5,516,466	-				+0.7
5,516,466	-				+2.3
5,516,466	-				-1.9
5,516,466	-				+0.1
5,516,466	-				+0.7
5,516,466	-				-1.1
5,516,466	-				+1.6
5,516,466	-				-0.8
5,516,466	-				-0.6
5,516,567	+				-1.6
5,516,567	+				-1.9
5,516,567	+				-0.9
5,516,567	+				+1.7
5,516,652	+				+0.5
5,516,652	+				+0.8
5,516,652	+				-1.4
5,516,652	+				+0.6
5,516,652	+				+0.3
5,516,652	+				-0.6
5,516,652	+				-0.2
5,516,653	-				-2.8
5,516,653	-				+1.2
5,516,653	-				+1.5
5,516,653	-				-0.0
5,516,653	-				-0.6
5,516,653	-				+0.9
5,516,661	+				-0.4
5,516,661	+				-2.5
5,516,661	+				-1.1
5,516,661	+				-1.6
5,516,661	+				+0.2
5,516,661	+				-0.6
5,516,662	-				+0.1
5,516,662	-				+1.4
5,516,662	-				+0.5
5,516,662	-				+0.1
5,516,662	-				-0.9
5,516,662	-				-0.9
5,516,662	-				-1.4
5,516,669	+				-0.5
5,516,670	-				+1.7
5,516,700	-				+0.8
5,516,730	+				+3.1
5,516,730	+				+1.2
5,516,730	+				-2.5
5,516,730	+				-1.6
5,516,730	+				-1.4
5,516,730	+				-0.4
5,516,730	+				+0.2
5,516,730	+				-0.8
5,516,730	+				+0.8
5,516,730	+				+0.5
5,516,730	+				-1.2
5,516,730	+				-0.5
5,516,730	+				+1.2
5,516,730	+				+0.3
5,516,730	+				+0.2
5,516,730	+				-2.9
5,516,730	+				+1.0
5,516,731	-				+0.2
5,516,731	-				+1.0
5,516,731	-				+0.3
5,516,731	-				+1.2
5,516,731	-				+1.2
5,516,731	-				+2.2
5,516,731	-				-1.1
5,516,731	-				-0.8
5,516,731	-				+0.0
5,516,731	-				-0.1
5,516,731	-				+0.3
5,516,731	-				+0.1
5,516,731	-				+1.1
5,516,731	-				+0.2
5,516,731	-				-0.1
5,516,731	-				-0.9
5,516,734	+				+0.0
5,516,734	+				-0.7
5,516,734	+				+0.7
5,516,734	+				-2.1
5,516,734	+				+0.4
5,516,734	+				-2.2
5,516,734	+				+0.0
5,516,734	+				+2.0
5,516,734	+				-1.9
5,516,734	+				+0.6
5,516,734	+				+0.4
5,516,734	+				-0.3
5,516,734	+				+2.6
5,516,734	+				-1.5
5,516,734	+				-1.3
5,516,734	+				+0.2
5,516,734	+				+1.0
5,516,734	+				-3.1
5,516,734	+				-0.5
5,516,734	+				-0.6
5,516,734	+				+2.0
5,516,734	+				+0.6
5,516,734	+				+1.4
5,516,734	+				+0.1
5,516,734	+				-0.6
5,516,734	+				+0.2
5,516,734	+				+0.1
5,516,734	+				-0.2
5,516,734	+				+0.4
5,516,734	+				-0.1
5,516,734	+				+0.7
5,516,734	+				-0.0
5,516,734	+				-1.1
5,516,734	+				+1.2
5,516,734	+				+0.8
5,516,734	+				+0.7
5,516,734	+				+0.4
5,516,734	+				+0.6
5,516,734	+				-0.2
5,516,734	+				+0.4
5,516,734	+				-0.8
5,516,734	+				-0.4
5,516,735	-				+0.5
5,516,735	-				+0.2
5,516,735	-				-0.4
5,516,735	-				+1.7
5,516,735	-				-0.2
5,516,735	-				+0.0
5,516,735	-				+0.8
5,516,735	-				-1.8
5,516,735	-				+0.2
5,516,735	-				+0.6
5,516,735	-				-0.4
5,516,735	-				+0.5
5,516,735	-				+0.2
5,516,735	-				-1.1
5,516,735	-				+1.0
5,516,735	-				+0.0
5,516,735	-				-1.0
5,516,735	-				+0.3
5,516,735	-				-1.8
5,516,735	-				+0.8
5,516,735	-				-0.5
5,516,735	-				-0.4
5,516,735	-				+0.2
5,516,735	-				+0.6
5,516,735	-				+0.1
5,516,735	-				+2.7
5,516,735	-				-1.1
5,516,735	-				+1.7
5,516,735	-				-0.6
5,516,735	-				+0.2
5,516,735	-				-1.3
5,516,735	-				-1.2
5,516,735	-				-0.0
5,516,735	-				-1.4
5,516,735	-				+1.2
5,516,735	-				+0.7
5,516,735	-				+0.5
5,516,735	-				-2.5
5,516,735	-				+1.5
5,516,735	-				-0.3
5,516,735	-				-0.7
5,516,735	-				-0.4
5,516,735	-				-1.8
5,516,882	+				+1.4
5,516,882	+				-0.6
5,516,882	+				+1.1
5,516,882	+				-0.8
5,516,882	+				-0.6
5,516,882	+				-0.4
5,516,882	+				-1.4
5,516,882	+				+0.6
5,516,883	-				-0.9
5,516,883	-				+1.1
5,516,883	-				-0.6
5,516,883	-				+1.1
5,516,901	+				+0.5
5,516,902	-				+0.8
5,516,905	+				+0.2
5,516,912	+				-0.4
5,516,945	+				-1.2
5,516,954	+				+1.2
5,517,080	-		Psyr_4655	0.29	+1.0
5,517,080	-		Psyr_4655	0.29	-0.8
5,517,128	+		Psyr_4655	0.42	-0.0
5,517,128	+		Psyr_4655	0.42	+1.1
5,517,128	+		Psyr_4655	0.42	+0.2
5,517,129	-				+1.6
5,517,129	-		Psyr_4655	0.42	+0.8
5,517,129	-		Psyr_4655	0.42	+1.7
5,517,130	+		Psyr_4655	0.43	+2.0
5,517,131	-		Psyr_4655	0.43	+1.7