Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4394 and Psyr_4395 are separated by 1 nucleotides Psyr_4395 and Psyr_4396 are separated by 35 nucleotides Psyr_4396 and Psyr_4397 overlap by 4 nucleotides Psyr_4397 and Psyr_4398 are separated by 76 nucleotides
Psyr_4394: Psyr_4394 - type II secretion system protein, at 5,256,440 to 5,257,324
_4394
Psyr_4395: Psyr_4395 - type II secretion system protein, at 5,257,326 to 5,258,210
_4395
Psyr_4396: Psyr_4396 - TPR repeat protein, at 5,258,246 to 5,258,980
_4396
Psyr_4397: Psyr_4397 - conserved hypothetical protein, at 5,258,977 to 5,259,249
_4397
Psyr_4398: Psyr_4398 - Protein-disulfide reductase, at 5,259,326 to 5,261,146
_4398
Position (kb) 5258
5259 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.400 kb on + strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.401 kb on - strand at 5257.403 kb on + strand at 5257.403 kb on + strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.404 kb on - strand at 5257.535 kb on - strand, within Psyr_4395 at 5257.535 kb on - strand, within Psyr_4395 at 5257.535 kb on - strand, within Psyr_4395 at 5257.705 kb on - strand, within Psyr_4395 at 5257.705 kb on - strand, within Psyr_4395 at 5257.776 kb on - strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.091 kb on + strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.092 kb on - strand, within Psyr_4395 at 5258.181 kb on - strand at 5258.181 kb on - strand at 5258.181 kb on - strand at 5258.188 kb on + strand at 5258.188 kb on + strand at 5258.189 kb on - strand at 5258.189 kb on - strand at 5258.189 kb on - strand at 5258.219 kb on + strand at 5258.219 kb on + strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.220 kb on - strand at 5258.262 kb on + strand at 5258.262 kb on + strand at 5258.262 kb on + strand at 5258.263 kb on - strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.265 kb on + strand at 5258.266 kb on - strand at 5258.496 kb on + strand, within Psyr_4396 at 5258.497 kb on - strand, within Psyr_4396 at 5258.525 kb on + strand, within Psyr_4396 at 5258.687 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.795 kb on + strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.796 kb on - strand, within Psyr_4396 at 5258.971 kb on - strand at 5258.971 kb on - strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.990 kb on + strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5258.991 kb on - strand at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.005 kb on + strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.006 kb on - strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.181 kb on + strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.182 kb on - strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.183 kb on + strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.184 kb on - strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.187 kb on + strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.188 kb on - strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.205 kb on + strand, within Psyr_4397 at 5259.247 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.286 kb on + strand at 5259.287 kb on - strand at 5259.287 kb on - strand at 5259.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,257,400 + -1.0 5,257,400 + -1.0 5,257,400 + -0.2 5,257,401 - -0.1 5,257,401 - +0.8 5,257,401 - -0.3 5,257,401 - +0.3 5,257,401 - -0.3 5,257,401 - +0.4 5,257,401 - -0.3 5,257,401 - +0.5 5,257,403 + +1.4 5,257,403 + +1.5 5,257,404 - -0.3 5,257,404 - -0.3 5,257,404 - -2.5 5,257,404 - +1.3 5,257,535 - Psyr_4395 0.24 -0.4 5,257,535 - Psyr_4395 0.24 +1.0 5,257,535 - Psyr_4395 0.24 +1.2 5,257,705 - Psyr_4395 0.43 -1.4 5,257,705 - Psyr_4395 0.43 +0.3 5,257,776 - Psyr_4395 0.51 -1.7 5,258,091 + Psyr_4395 0.86 -2.7 5,258,091 + Psyr_4395 0.86 +1.2 5,258,091 + Psyr_4395 0.86 -0.3 5,258,091 + Psyr_4395 0.86 +1.9 5,258,092 - Psyr_4395 0.87 -0.1 5,258,092 - Psyr_4395 0.87 +1.8 5,258,092 - Psyr_4395 0.87 -1.6 5,258,181 - +0.3 5,258,181 - -0.5 5,258,181 - +1.0 5,258,188 + +2.8 5,258,188 + -1.0 5,258,189 - +0.3 5,258,189 - -1.5 5,258,189 - -0.4 5,258,219 + -2.4 5,258,219 + +0.4 5,258,220 - +0.3 5,258,220 - -1.6 5,258,220 - +0.6 5,258,220 - +1.2 5,258,262 + -0.5 5,258,262 + -0.8 5,258,262 + -0.4 5,258,263 - +0.5 5,258,265 + -0.2 5,258,265 + -1.0 5,258,265 + -1.1 5,258,265 + +2.9 5,258,265 + +1.7 5,258,266 - -1.8 5,258,496 + Psyr_4396 0.34 -0.3 5,258,497 - Psyr_4396 0.34 -1.4 5,258,525 + Psyr_4396 0.38 -0.3 5,258,687 + Psyr_4396 0.60 +0.0 5,258,795 + Psyr_4396 0.75 +0.4 5,258,795 + Psyr_4396 0.75 -0.9 5,258,796 - Psyr_4396 0.75 -1.8 5,258,796 - Psyr_4396 0.75 +0.2 5,258,971 - +0.9 5,258,971 - -0.4 5,258,990 + -0.9 5,258,990 + +0.3 5,258,990 + +0.5 5,258,991 - -0.3 5,258,991 - -1.1 5,258,991 - +1.2 5,258,991 - -1.5 5,258,991 - +1.0 5,259,005 + Psyr_4397 0.10 +0.2 5,259,005 + Psyr_4397 0.10 +0.5 5,259,005 + Psyr_4397 0.10 -0.6 5,259,005 + Psyr_4397 0.10 -1.1 5,259,006 - Psyr_4397 0.11 -0.2 5,259,006 - Psyr_4397 0.11 +0.2 5,259,006 - Psyr_4397 0.11 -0.8 5,259,181 + Psyr_4397 0.75 -0.8 5,259,181 + Psyr_4397 0.75 -2.7 5,259,181 + Psyr_4397 0.75 +0.9 5,259,181 + Psyr_4397 0.75 +2.3 5,259,181 + Psyr_4397 0.75 -1.6 5,259,181 + Psyr_4397 0.75 -0.3 5,259,181 + Psyr_4397 0.75 +3.3 5,259,181 + Psyr_4397 0.75 -0.1 5,259,181 + Psyr_4397 0.75 -0.2 5,259,181 + Psyr_4397 0.75 -1.5 5,259,181 + Psyr_4397 0.75 +0.2 5,259,181 + Psyr_4397 0.75 -0.1 5,259,181 + Psyr_4397 0.75 -0.7 5,259,181 + Psyr_4397 0.75 +1.2 5,259,182 - Psyr_4397 0.75 -0.4 5,259,182 - Psyr_4397 0.75 -0.1 5,259,182 - Psyr_4397 0.75 +1.0 5,259,182 - -0.4 5,259,182 - Psyr_4397 0.75 +1.4 5,259,182 - Psyr_4397 0.75 -0.4 5,259,182 - Psyr_4397 0.75 -1.1 5,259,182 - Psyr_4397 0.75 -1.3 5,259,182 - Psyr_4397 0.75 +0.9 5,259,182 - Psyr_4397 0.75 +0.4 5,259,182 - Psyr_4397 0.75 +1.3 5,259,182 - Psyr_4397 0.75 -1.4 5,259,182 - Psyr_4397 0.75 +0.2 5,259,182 - Psyr_4397 0.75 +1.0 5,259,182 - Psyr_4397 0.75 -0.2 5,259,182 - Psyr_4397 0.75 -2.2 5,259,182 - Psyr_4397 0.75 +0.6 5,259,182 - Psyr_4397 0.75 -1.1 5,259,183 + Psyr_4397 0.75 +1.2 5,259,183 + Psyr_4397 0.75 -0.3 5,259,183 + Psyr_4397 0.75 +0.2 5,259,183 + Psyr_4397 0.75 -0.9 5,259,183 + Psyr_4397 0.75 +0.8 5,259,183 + Psyr_4397 0.75 +0.2 5,259,183 + Psyr_4397 0.75 +0.4 5,259,183 + Psyr_4397 0.75 +1.2 5,259,183 + Psyr_4397 0.75 -1.4 5,259,183 + Psyr_4397 0.75 -0.6 5,259,183 + Psyr_4397 0.75 +0.0 5,259,183 + Psyr_4397 0.75 +0.4 5,259,184 - Psyr_4397 0.76 +0.2 5,259,184 - Psyr_4397 0.76 +0.1 5,259,184 - Psyr_4397 0.76 -1.5 5,259,184 - Psyr_4397 0.76 -1.6 5,259,184 - Psyr_4397 0.76 -0.5 5,259,184 - Psyr_4397 0.76 -0.9 5,259,184 - Psyr_4397 0.76 +0.4 5,259,184 - Psyr_4397 0.76 -0.1 5,259,184 - Psyr_4397 0.76 +0.1 5,259,184 - Psyr_4397 0.76 -0.4 5,259,184 - Psyr_4397 0.76 +0.7 5,259,184 - Psyr_4397 0.76 -0.5 5,259,184 - Psyr_4397 0.76 -0.9 5,259,187 + Psyr_4397 0.77 +1.3 5,259,187 + Psyr_4397 0.77 +0.4 5,259,187 + Psyr_4397 0.77 +0.2 5,259,187 + Psyr_4397 0.77 -0.2 5,259,188 - Psyr_4397 0.77 -0.5 5,259,188 - Psyr_4397 0.77 +1.8 5,259,188 - Psyr_4397 0.77 -0.8 5,259,188 - Psyr_4397 0.77 -0.8 5,259,188 - Psyr_4397 0.77 +0.9 5,259,188 - Psyr_4397 0.77 +1.2 5,259,188 - Psyr_4397 0.77 -1.3 5,259,188 - Psyr_4397 0.77 +0.4 5,259,188 - Psyr_4397 0.77 +0.8 5,259,205 + Psyr_4397 0.84 -1.4 5,259,205 + Psyr_4397 0.84 +0.1 5,259,247 + -0.4 5,259,286 + -1.0 5,259,286 + -1.1 5,259,286 + +1.5 5,259,287 - -1.4 5,259,287 - +0.3 5,259,287 - -0.1
Or see this region's nucleotide sequence