Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2761

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,347,802	+				-0.6
3,347,802	+				+1.1
3,347,846	+				-3.5
3,347,970	+				+1.2
3,347,971	-				-0.8
3,348,014	+				+0.6
3,348,014	+				-1.8
3,348,014	+				-0.5
3,348,016	+				+0.6
3,348,016	+				-2.0
3,348,016	+				+0.7
3,348,016	+				+2.0
3,348,016	+				+0.3
3,348,016	+				-0.3
3,348,016	+				+1.2
3,348,018	+				+1.8
3,348,018	+				-1.8
3,348,018	+				-0.3
3,348,018	+				+0.8
3,348,191	+				-0.2
3,348,191	+				-1.1
3,348,191	+				-0.5
3,348,192	-				+0.8
3,348,276	+				-2.0
3,348,281	+				-0.0
3,348,402	+		Psyr_2760	0.25	-0.4
3,348,403	-		Psyr_2760	0.25	-0.1
3,348,403	-		Psyr_2760	0.25	-1.5
3,348,403	-		Psyr_2760	0.25	-0.4
3,348,423	-		Psyr_2760	0.30	+0.4
3,348,435	+		Psyr_2760	0.34	-1.0
3,348,531	+		Psyr_2760	0.60	-3.2
3,348,531	+		Psyr_2760	0.60	-1.4
3,348,531	+		Psyr_2760	0.60	-0.2
3,348,531	+		Psyr_2760	0.60	+1.2
3,348,531	+		Psyr_2760	0.60	-0.4
3,348,531	+		Psyr_2760	0.60	-0.8
3,348,531	+		Psyr_2760	0.60	+3.2
3,348,531	+		Psyr_2760	0.60	+0.0
3,348,531	+		Psyr_2760	0.60	-0.9
3,348,531	+		Psyr_2760	0.60	+1.8
3,348,531	+		Psyr_2760	0.60	+1.5
3,348,532	-		Psyr_2760	0.60	-1.0
3,348,532	-		Psyr_2760	0.60	+0.9
3,348,532	-		Psyr_2760	0.60	+0.2
3,348,765	+				+0.9
3,348,975	+		Psyr_2761	0.20	+1.2
3,348,975	+		Psyr_2761	0.20	+1.6
3,348,975	+		Psyr_2761	0.20	+1.3
3,348,975	+		Psyr_2761	0.20	-0.4
3,348,975	+		Psyr_2761	0.20	-0.0
3,348,976	-		Psyr_2761	0.20	-2.8
3,348,976	-		Psyr_2761	0.20	-0.7
3,348,976	-		Psyr_2761	0.20	-2.4
3,348,981	+		Psyr_2761	0.20	-0.2
3,348,981	+		Psyr_2761	0.20	+0.6
3,348,982	-		Psyr_2761	0.20	+1.7
3,348,982	-		Psyr_2761	0.20	-2.8
3,349,084	-		Psyr_2761	0.28	+1.1
3,349,084	-		Psyr_2761	0.28	+1.8
3,349,087	+		Psyr_2761	0.28	+0.9
3,349,087	+		Psyr_2761	0.28	-1.4
3,349,087	+		Psyr_2761	0.28	+0.6
3,349,088	-		Psyr_2761	0.29	+0.2
3,349,088	-		Psyr_2761	0.29	-0.0
3,349,108	+		Psyr_2761	0.30	+1.7
3,349,108	+		Psyr_2761	0.30	+0.4
3,349,108	+		Psyr_2761	0.30	-0.1
3,349,108	+		Psyr_2761	0.30	+0.3
3,349,108	+		Psyr_2761	0.30	-1.8
3,349,108	+		Psyr_2761	0.30	+0.6
3,349,108	+		Psyr_2761	0.30	-0.2
3,349,108	+		Psyr_2761	0.30	-1.1
3,349,108	+		Psyr_2761	0.30	+0.4
3,349,109	-		Psyr_2761	0.30	+0.6
3,349,109	-		Psyr_2761	0.30	+0.5
3,349,109	-		Psyr_2761	0.30	+0.3
3,349,109	-		Psyr_2761	0.30	+0.9
3,349,109	-		Psyr_2761	0.30	+0.9
3,349,109	-		Psyr_2761	0.30	-0.6
3,349,185	+		Psyr_2761	0.36	-0.0
3,349,185	+		Psyr_2761	0.36	+0.0
3,349,186	-		Psyr_2761	0.36	+0.6
3,349,186	-		Psyr_2761	0.36	-2.6
3,349,352	+		Psyr_2761	0.49	+1.2
3,349,409	+		Psyr_2761	0.54	+1.9
3,349,409	+		Psyr_2761	0.54	-0.0
3,349,409	+		Psyr_2761	0.54	-0.2
3,349,409	+		Psyr_2761	0.54	-0.6
3,349,410	-		Psyr_2761	0.54	+1.6
3,349,410	-		Psyr_2761	0.54	+0.5
3,349,410	-		Psyr_2761	0.54	+0.6
3,349,459	+		Psyr_2761	0.58	-2.4
3,349,459	+		Psyr_2761	0.58	-0.4
3,349,459	+		Psyr_2761	0.58	-0.2
3,349,460	-		Psyr_2761	0.58	+0.8
3,349,460	-		Psyr_2761	0.58	-0.8
3,349,460	-		Psyr_2761	0.58	+1.9
3,349,460	-		Psyr_2761	0.58	-2.2
3,349,595	+		Psyr_2761	0.68	+1.3
3,349,595	+		Psyr_2761	0.68	+2.4
3,349,596	-		Psyr_2761	0.68	-1.0
3,349,598	-		Psyr_2761	0.68	-1.4
3,349,693	+		Psyr_2761	0.76	-0.1
3,349,694	-		Psyr_2761	0.76	+0.7
3,349,694	-		Psyr_2761	0.76	+0.2
3,349,695	+		Psyr_2761	0.76	+0.3
3,349,696	-		Psyr_2761	0.76	+0.7
3,349,759	-		Psyr_2761	0.81	+0.4
3,349,767	+		Psyr_2761	0.82	-0.5
3,349,767	+		Psyr_2761	0.82	-1.3
3,349,767	+		Psyr_2761	0.82	+0.4
3,349,768	-		Psyr_2761	0.82	-2.8
3,349,768	-		Psyr_2761	0.82	+1.4
3,349,768	-		Psyr_2761	0.82	-2.4
3,349,824	+		Psyr_2761	0.86	+1.7
3,349,860	+		Psyr_2761	0.89	+0.6
3,349,860	+		Psyr_2761	0.89	+1.3
3,349,860	+		Psyr_2761	0.89	+0.9
3,349,861	-		Psyr_2761	0.89	-0.2
3,349,892	-				+0.8
3,349,902	-				+0.8
3,349,902	-				+1.5
3,349,902	-				+1.4
3,349,953	+				-0.1
3,350,018	-				+2.2
3,350,112	-		Psyr_2762	0.28	+1.2
3,350,112	-		Psyr_2762	0.28	-1.8
3,350,112	-		Psyr_2762	0.28	-0.8
3,350,166	-		Psyr_2762	0.41	+0.6
3,350,196	+		Psyr_2762	0.48	+0.8
3,350,197	-		Psyr_2762	0.48	-2.6
3,350,217	-		Psyr_2762	0.53	+0.7
3,350,255	+		Psyr_2762	0.62	-0.2
3,350,263	+		Psyr_2762	0.63	-0.3
3,350,304	+		Psyr_2762	0.73	-2.0
3,350,304	+		Psyr_2762	0.73	-0.8
3,350,304	+		Psyr_2762	0.73	+0.8
3,350,305	-		Psyr_2762	0.73	+0.4
3,350,306	+		Psyr_2762	0.73	+0.7
3,350,306	+		Psyr_2762	0.73	-1.4
3,350,306	+		Psyr_2762	0.73	-2.7
3,350,306	+		Psyr_2762	0.73	+0.7
3,350,306	+		Psyr_2762	0.73	-0.5
3,350,306	+		Psyr_2762	0.73	+0.8
3,350,306	+		Psyr_2762	0.73	+0.2
3,350,306	+		Psyr_2762	0.73	+0.6
3,350,306	+		Psyr_2762	0.73	-0.2
3,350,306	+		Psyr_2762	0.73	-0.4
3,350,306	+		Psyr_2762	0.73	+0.1
3,350,306	+		Psyr_2762	0.73	-2.6
3,350,306	+		Psyr_2762	0.73	-0.7
3,350,306	+		Psyr_2762	0.73	+3.4
3,350,307	-		Psyr_2762	0.74	-1.2
3,350,307	-		Psyr_2762	0.74	-0.2
3,350,307	-		Psyr_2762	0.74	-0.2
3,350,307	-		Psyr_2762	0.74	+0.9
3,350,307	-		Psyr_2762	0.74	+1.2
3,350,307	-		Psyr_2762	0.74	-1.8
3,350,307	-		Psyr_2762	0.74	+1.9
3,350,307	-		Psyr_2762	0.74	-1.4
3,350,307	-		Psyr_2762	0.74	-2.2
3,350,307	-		Psyr_2762	0.74	-2.1
3,350,307	-		Psyr_2762	0.74	-0.9
3,350,307	-		Psyr_2762	0.74	-2.0
3,350,307	-		Psyr_2762	0.74	+0.1
3,350,307	-		Psyr_2762	0.74	-0.1
3,350,307	-		Psyr_2762	0.74	-0.0
3,350,307	-		Psyr_2762	0.74	-0.2
3,350,307	-		Psyr_2762	0.74	-0.1
3,350,353	-		Psyr_2762	0.84	+0.7
3,350,407	+				+0.9
3,350,407	+				-0.2
3,350,408	-				-1.4
3,350,581	+				+2.1
3,350,581	+				+1.1
3,350,585	+				-0.4
3,350,585	+				+1.4
3,350,586	-				-0.8
3,350,647	+		Psyr_2763	0.15	-0.7
3,350,648	-		Psyr_2763	0.15	+0.2
3,350,648	-		Psyr_2763	0.15	+0.1
3,350,648	-		Psyr_2763	0.15	+3.1
3,350,902	+		Psyr_2763	0.52	+0.8
3,350,902	+		Psyr_2763	0.52	-0.3
3,350,902	+		Psyr_2763	0.52	+1.6
3,350,902	+		Psyr_2763	0.52	+0.1
3,350,902	+		Psyr_2763	0.52	-0.4
3,350,903	-		Psyr_2763	0.52	-1.2
3,350,903	-		Psyr_2763	0.52	+0.2
3,350,903	-		Psyr_2763	0.52	+0.6
3,351,000	+		Psyr_2763	0.66	+0.0
3,351,001	-		Psyr_2763	0.67	+0.3