Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1511

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,696,532	+		Psyr_1510	0.30	-1.0
1,696,532	+		Psyr_1510	0.30	+1.2
1,696,532	+		Psyr_1510	0.30	+0.8
1,696,532	+		Psyr_1510	0.30	-0.5
1,696,532	+		Psyr_1510	0.30	+0.9
1,696,532	+		Psyr_1510	0.30	+0.8
1,696,533	-		Psyr_1510	0.30	-1.9
1,696,533	-		Psyr_1510	0.30	+0.5
1,696,533	-		Psyr_1510	0.30	+2.3
1,696,533	-		Psyr_1510	0.30	-0.2
1,696,533	-		Psyr_1510	0.30	-0.4
1,696,533	-		Psyr_1510	0.30	-0.5
1,696,560	-		Psyr_1510	0.32	-0.6
1,696,667	+		Psyr_1510	0.40	-0.3
1,696,667	+		Psyr_1510	0.40	-1.4
1,696,668	-		Psyr_1510	0.40	+1.4
1,696,668	-		Psyr_1510	0.40	-0.5
1,696,669	+		Psyr_1510	0.40	+0.4
1,696,669	+		Psyr_1510	0.40	-1.9
1,696,669	+		Psyr_1510	0.40	-1.8
1,696,669	+		Psyr_1510	0.40	+0.4
1,696,669	+		Psyr_1510	0.40	-0.1
1,696,669	+		Psyr_1510	0.40	-0.5
1,696,669	+		Psyr_1510	0.40	-0.3
1,696,669	+		Psyr_1510	0.40	-0.4
1,696,669	+		Psyr_1510	0.40	-0.1
1,696,669	+		Psyr_1510	0.40	+2.1
1,696,669	+		Psyr_1510	0.40	-0.2
1,696,669	+		Psyr_1510	0.40	+1.3
1,696,670	-		Psyr_1510	0.40	-0.4
1,696,670	-		Psyr_1510	0.40	+1.8
1,696,670	-		Psyr_1510	0.40	+1.9
1,696,670	-		Psyr_1510	0.40	+0.8
1,696,670	-		Psyr_1510	0.40	+0.9
1,696,670	-		Psyr_1510	0.40	+0.4
1,696,670	-		Psyr_1510	0.40	-0.5
1,696,670	-		Psyr_1510	0.40	+2.2
1,696,670	-		Psyr_1510	0.40	-1.8
1,696,670	-		Psyr_1510	0.40	-1.5
1,696,670	-		Psyr_1510	0.40	+1.9
1,696,670	-		Psyr_1510	0.40	-1.6
1,696,670	-		Psyr_1510	0.40	+0.6
1,696,670	-		Psyr_1510	0.40	+0.8
1,696,670	-		Psyr_1510	0.40	-0.1
1,696,670	-		Psyr_1510	0.40	-1.4
1,696,670	-		Psyr_1510	0.40	-0.2
1,696,800	+		Psyr_1510	0.49	-0.6
1,696,800	+		Psyr_1510	0.49	-0.9
1,696,800	+		Psyr_1510	0.49	+1.4
1,696,801	-		Psyr_1510	0.49	+0.2
1,696,801	-		Psyr_1510	0.49	-0.6
1,696,929	-		Psyr_1510	0.58	+1.7
1,697,000	+		Psyr_1510	0.63	+1.4
1,697,000	+		Psyr_1510	0.63	-2.0
1,697,001	-		Psyr_1510	0.63	-0.1
1,697,001	-		Psyr_1510	0.63	-0.6
1,697,032	+		Psyr_1510	0.65	-0.3
1,697,032	+		Psyr_1510	0.65	+0.4
1,697,240	+		Psyr_1510	0.80	-1.9
1,697,240	+		Psyr_1510	0.80	-1.6
1,697,240	+		Psyr_1510	0.80	+1.0
1,697,240	+		Psyr_1510	0.80	-2.4
1,697,240	+		Psyr_1510	0.80	-0.1
1,697,240	+		Psyr_1510	0.80	-0.4
1,697,241	-		Psyr_1510	0.80	+1.2
1,697,241	-		Psyr_1510	0.80	+0.0
1,697,241	-		Psyr_1510	0.80	-0.9
1,697,255	-		Psyr_1510	0.81	+0.2
1,697,304	-		Psyr_1510	0.85	-1.6
1,697,304	-		Psyr_1510	0.85	-1.3
1,697,330	+		Psyr_1510	0.87	-1.0
1,697,330	+		Psyr_1510	0.87	+0.1
1,697,330	+		Psyr_1510	0.87	-0.9
1,697,331	-		Psyr_1510	0.87	+2.2
1,697,334	+		Psyr_1510	0.87	+0.2
1,697,335	-		Psyr_1510	0.87	-0.3
1,697,381	+				-0.6
1,697,382	-				-1.6
1,697,382	-				-1.9
1,697,382	-				+2.1
1,697,382	-				+0.9
1,697,382	-				+0.5
1,697,422	+				+0.5
1,697,423	-				-1.1
1,697,423	-				+1.1
1,697,682	+		Psyr_1511	0.18	+0.9
1,697,682	+		Psyr_1511	0.18	-1.2
1,697,683	-		Psyr_1511	0.18	-1.2
1,697,683	-		Psyr_1511	0.18	+0.7
1,697,683	-		Psyr_1511	0.18	-0.3
1,697,689	-		Psyr_1511	0.19	-1.4
1,697,689	-		Psyr_1511	0.19	-1.3
1,698,031	-		Psyr_1511	0.55	-1.4
1,698,031	-		Psyr_1511	0.55	-2.8
1,698,069	-		Psyr_1511	0.59	-1.3
1,698,120	-		Psyr_1511	0.65	-0.9
1,698,319	-		Psyr_1511	0.86	+0.1
1,698,384	+				+0.5
1,698,384	+				-1.9
1,698,384	+				-0.5
1,698,384	+				-1.4
1,698,384	+				+0.9
1,698,385	-				+0.2
1,698,385	-				+0.2
1,698,410	-				-2.5
1,698,419	+				-0.5
1,698,478	+				+0.5
1,698,484	+				+0.9
1,698,484	+				-1.2
1,698,547	+		Psyr_1512	0.19	-1.1
1,698,547	+		Psyr_1512	0.19	+0.1
1,698,681	+		Psyr_1512	0.44	-1.4
1,698,681	+		Psyr_1512	0.44	+0.9
1,698,681	+		Psyr_1512	0.44	-1.1
1,698,681	+		Psyr_1512	0.44	-1.6
1,698,682	-		Psyr_1512	0.44	-0.3
1,698,682	-		Psyr_1512	0.44	+0.2
1,698,682	-		Psyr_1512	0.44	+0.2
1,698,682	-		Psyr_1512	0.44	-0.1
1,698,706	+		Psyr_1512	0.49	+0.2
1,698,706	+		Psyr_1512	0.49	+1.5
1,698,707	-		Psyr_1512	0.49	-0.0
1,698,707	-		Psyr_1512	0.49	+0.1
1,698,722	+		Psyr_1512	0.52	+0.7
1,698,868	-		Psyr_1512	0.80	-0.1
1,698,868	-		Psyr_1512	0.80	+1.3
1,698,896	-		Psyr_1512	0.85	-0.1
1,698,928	+				+0.5
1,698,928	+				-0.6
1,698,928	+				-2.2
1,698,928	+				-2.2
1,698,929	-				+0.1
1,698,929	-				-1.6
1,698,929	-				-0.8
1,698,929	-				+0.9
1,698,929	-				-2.1
1,698,929	-				+0.4
1,698,930	+				+0.7
1,698,930	+				-0.4
1,698,931	-				-1.0
1,698,931	-				+0.3
1,698,931	-				+0.1
1,698,931	-				+1.6
1,698,931	-				+0.5
1,698,931	-				-0.4
1,698,989	+				-1.4
1,699,006	+				-1.1
1,699,007	-				+0.9
1,699,007	-				+0.3
1,699,053	-				-0.6
1,699,147	+		Psyr_1513	0.12	-3.1
1,699,148	-		Psyr_1513	0.12	+1.1
1,699,264	+		Psyr_1513	0.23	-1.1
1,699,264	+		Psyr_1513	0.23	+0.9
1,699,264	+		Psyr_1513	0.23	+0.8
1,699,265	-		Psyr_1513	0.23	+0.8
1,699,265	-		Psyr_1513	0.23	-1.9
1,699,265	-		Psyr_1513	0.23	+0.8
1,699,265	-		Psyr_1513	0.23	-0.6
1,699,265	-		Psyr_1513	0.23	+1.7
1,699,351	+		Psyr_1513	0.31	-1.4
1,699,439	+		Psyr_1513	0.39	-0.9
1,699,439	+		Psyr_1513	0.39	-1.9
1,699,439	+				+2.9
1,699,439	+		Psyr_1513	0.39	+0.7
1,699,440	-		Psyr_1513	0.39	+3.1
1,699,440	-		Psyr_1513	0.39	-0.1
1,699,440	-		Psyr_1513	0.39	-1.3
1,699,440	-		Psyr_1513	0.39	+1.5