Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1332

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,509,765	-				-2.6
1,509,765	-				-2.0
1,509,765	-				+0.0
1,509,812	-				+0.9
1,509,858	+				-1.8
1,509,858	+				-2.6
1,509,859	-				-0.6
1,509,906	+				+0.3
1,509,906	+				+0.0
1,509,907	-				-0.2
1,509,907	-				+0.0
1,509,907	-				-1.3
1,509,907	-				-0.0
1,510,038	+				+1.0
1,510,039	-				+0.2
1,510,054	+				-0.4
1,510,055	-				+0.7
1,510,055	-				-0.1
1,510,055	-				+0.7
1,510,055	-				+0.3
1,510,092	+				-2.2
1,510,092	+				+1.5
1,510,092	+				-1.3
1,510,092	+				+1.3
1,510,092	+				+1.0
1,510,092	+				-0.6
1,510,092	+				+0.6
1,510,093	-				-0.3
1,510,093	-				-2.2
1,510,093	-				-0.2
1,510,093	-				+1.5
1,510,093	-				-1.6
1,510,093	-				+0.2
1,510,109	+				+0.3
1,510,110	-				+0.3
1,510,292	-		Psyr_1332	0.17	+0.7
1,510,370	+		Psyr_1332	0.20	+0.9
1,510,370	+		Psyr_1332	0.20	+0.9
1,510,370	+		Psyr_1332	0.20	-0.9
1,510,371	-		Psyr_1332	0.20	+0.2
1,510,371	-		Psyr_1332	0.20	+2.0
1,510,419	-		Psyr_1332	0.22	+1.0
1,510,491	+		Psyr_1332	0.25	+0.4
1,510,491	+		Psyr_1332	0.25	+0.3
1,510,491	+		Psyr_1332	0.25	-1.6
1,510,491	+		Psyr_1332	0.25	-0.8
1,510,492	-		Psyr_1332	0.25	+0.2
1,510,492	-		Psyr_1332	0.25	+0.1
1,510,499	+		Psyr_1332	0.26	+0.9
1,510,499	+		Psyr_1332	0.26	+0.8
1,510,500	-		Psyr_1332	0.26	+0.9
1,510,539	+		Psyr_1332	0.27	+1.6
1,510,539	+		Psyr_1332	0.27	+0.3
1,510,562	+		Psyr_1332	0.28	-2.6
1,510,563	-		Psyr_1332	0.28	+0.2
1,510,605	+		Psyr_1332	0.30	-0.6
1,510,605	+		Psyr_1332	0.30	+0.5
1,510,605	+		Psyr_1332	0.30	+0.7
1,510,605	+		Psyr_1332	0.30	+0.4
1,510,606	-		Psyr_1332	0.30	+0.7
1,510,606	-		Psyr_1332	0.30	+1.8
1,510,606	-		Psyr_1332	0.30	+1.5
1,510,633	+		Psyr_1332	0.31	-0.6
1,510,633	+		Psyr_1332	0.31	+0.7
1,510,634	-		Psyr_1332	0.31	+1.6
1,510,705	-		Psyr_1332	0.34	+0.7
1,510,744	-		Psyr_1332	0.35	-0.6
1,510,860	+		Psyr_1332	0.40	-0.0
1,510,860	+		Psyr_1332	0.40	-0.3
1,510,860	+		Psyr_1332	0.40	+1.0
1,510,860	+		Psyr_1332	0.40	+0.6
1,510,860	+		Psyr_1332	0.40	+1.4
1,510,860	+		Psyr_1332	0.40	+0.4
1,510,860	+		Psyr_1332	0.40	-0.6
1,510,860	+		Psyr_1332	0.40	+1.5
1,510,861	-		Psyr_1332	0.40	+1.7
1,510,861	-		Psyr_1332	0.40	+1.4
1,510,861	-		Psyr_1332	0.40	+1.3
1,510,861	-		Psyr_1332	0.40	-0.7
1,510,861	-		Psyr_1332	0.40	-0.2
1,510,861	-		Psyr_1332	0.40	-0.7
1,510,861	-		Psyr_1332	0.40	+1.0
1,510,890	-		Psyr_1332	0.41	-0.1
1,510,912	+		Psyr_1332	0.42	+1.5
1,510,912	+		Psyr_1332	0.42	-1.6
1,510,912	+		Psyr_1332	0.42	+1.2
1,510,913	-		Psyr_1332	0.42	-0.1
1,510,913	-		Psyr_1332	0.42	+0.4
1,510,933	-		Psyr_1332	0.43	+0.2
1,510,946	+		Psyr_1332	0.43	+0.5
1,510,946	+		Psyr_1332	0.43	+0.4
1,510,946	+		Psyr_1332	0.43	-0.2
1,510,947	-		Psyr_1332	0.43	+1.5
1,510,947	-		Psyr_1332	0.43	+0.4
1,510,947	-		Psyr_1332	0.43	+0.0
1,510,947	-		Psyr_1332	0.43	+0.4
1,510,947	-		Psyr_1332	0.43	+0.8
1,510,947	-		Psyr_1332	0.43	+1.4
1,511,062	-		Psyr_1332	0.48	+0.6
1,511,062	-		Psyr_1332	0.48	-0.6
1,511,153	+		Psyr_1332	0.52	+0.7
1,511,153	+		Psyr_1332	0.52	+0.4
1,511,153	+		Psyr_1332	0.52	-0.2
1,511,154	-		Psyr_1332	0.52	+1.0
1,511,276	+		Psyr_1332	0.57	+1.0
1,511,276	+		Psyr_1332	0.57	+0.4
1,511,276	+		Psyr_1332	0.57	-0.7
1,511,276	+		Psyr_1332	0.57	+0.2
1,511,276	+		Psyr_1332	0.57	+3.0
1,511,276	+		Psyr_1332	0.57	+0.4
1,511,276	+		Psyr_1332	0.57	+0.2
1,511,276	+		Psyr_1332	0.57	-0.3
1,511,276	+		Psyr_1332	0.57	+1.4
1,511,277	-		Psyr_1332	0.57	-0.6
1,511,277	-		Psyr_1332	0.57	-0.6
1,511,277	-		Psyr_1332	0.57	+0.1
1,511,277	-		Psyr_1332	0.57	+0.6
1,511,277	-		Psyr_1332	0.57	+3.4
1,511,277	-		Psyr_1332	0.57	+0.0
1,511,277	-		Psyr_1332	0.57	-0.2
1,511,277	-		Psyr_1332	0.57	+1.1
1,511,301	+		Psyr_1332	0.58	+0.6
1,511,302	-		Psyr_1332	0.58	+0.9
1,511,346	-		Psyr_1332	0.59	+0.5
1,511,375	+		Psyr_1332	0.61	+1.1
1,511,376	-		Psyr_1332	0.61	-0.2
1,511,376	-		Psyr_1332	0.61	-1.6
1,511,390	-		Psyr_1332	0.61	+1.9
1,511,434	-		Psyr_1332	0.63	+2.3
1,511,443	+		Psyr_1332	0.63	+1.2
1,511,444	-		Psyr_1332	0.63	+1.9
1,511,444	-		Psyr_1332	0.63	+1.6
1,511,529	+		Psyr_1332	0.67	+1.4
1,511,529	+		Psyr_1332	0.67	+0.4
1,511,530	-		Psyr_1332	0.67	-0.8
1,511,530	-		Psyr_1332	0.67	-1.1
1,511,579	-		Psyr_1332	0.69	+0.6
1,511,588	+		Psyr_1332	0.69	+0.6
1,511,588	+		Psyr_1332	0.69	+0.0
1,511,588	+		Psyr_1332	0.69	-2.7
1,511,588	+		Psyr_1332	0.69	+0.6
1,511,589	-		Psyr_1332	0.69	-1.5
1,511,589	-		Psyr_1332	0.69	+0.4
1,511,589	-		Psyr_1332	0.69	-0.3
1,511,633	+		Psyr_1332	0.71	+3.0
1,511,633	+		Psyr_1332	0.71	+0.3
1,511,633	+		Psyr_1332	0.71	+2.7
1,511,633	+		Psyr_1332	0.71	+1.0
1,511,633	+		Psyr_1332	0.71	+1.3
1,511,633	+		Psyr_1332	0.71	+1.2
1,511,634	-		Psyr_1332	0.71	+0.6
1,511,634	-		Psyr_1332	0.71	-0.6
1,511,634	-		Psyr_1332	0.71	-2.9
1,511,634	-		Psyr_1332	0.71	-0.3
1,511,634	-		Psyr_1332	0.71	+0.6
1,511,634	-		Psyr_1332	0.71	+1.2
1,511,634	-		Psyr_1332	0.71	+1.9
1,511,634	-		Psyr_1332	0.71	+1.4
1,511,634	-		Psyr_1332	0.71	-0.7
1,511,634	-		Psyr_1332	0.71	-0.2
1,511,710	+		Psyr_1332	0.74	+1.0
1,511,710	+		Psyr_1332	0.74	+1.0
1,511,711	-		Psyr_1332	0.74	+1.1
1,511,711	-		Psyr_1332	0.74	-1.0
1,511,711	-		Psyr_1332	0.74	+1.7
1,511,812	-		Psyr_1332	0.78	+3.0
1,511,924	+		Psyr_1332	0.83	-0.7
1,511,924	+		Psyr_1332	0.83	-0.4
1,512,032	-		Psyr_1332	0.87	+0.3
1,512,032	-		Psyr_1332	0.87	-2.0
1,512,065	-		Psyr_1332	0.88	-0.1
1,512,144	-				-1.0
1,512,151	+				-0.7
1,512,151	+				+0.2
1,512,151	+				+0.4
1,512,152	-				-1.8
1,512,152	-				+0.4
1,512,152	-				-0.8
1,512,152	-				-0.7
1,512,154	-				-1.7
1,512,154	-				+0.3
1,512,154	-				+0.5
1,512,176	-				+1.5
1,512,193	+				+4.0
1,512,194	-				-0.6
1,512,224	+				-1.0
1,512,336	+				+1.0
1,512,454	+				-2.7
1,512,454	+				+1.0
1,512,455	-				-1.0
1,512,521	+				-0.8
1,512,537	+				-2.3
1,512,627	+				-0.4
1,512,629	+				-0.6
1,512,652	-				+1.0
1,512,699	+				-1.2
1,512,699	+				+2.0
1,512,699	+				+0.4
1,512,699	+				+0.3
1,512,700	-				-0.7
1,512,700	-				-1.0
1,512,700	-				-1.0
1,512,700	-				+1.3
1,512,700	-				+0.0
1,512,700	-				+0.2
1,512,700	-				-1.0
1,512,700	-				-1.3
1,512,700	-				+2.8
1,512,700	-				-0.5
1,512,701	+				+2.2
1,512,702	-				-0.8
1,512,848	-		Psyr_1333	0.23	-0.6
1,512,880	+		Psyr_1333	0.27	-1.0
1,512,881	-		Psyr_1333	0.27	-0.3
1,513,238	+		Psyr_1333	0.70	-0.8
1,513,238	+		Psyr_1333	0.70	-0.2
1,513,239	-		Psyr_1333	0.70	-0.4
1,513,297	+		Psyr_1333	0.77	-0.2
1,513,297	+		Psyr_1333	0.77	-0.8
1,513,298	-		Psyr_1333	0.77	-0.7
1,513,298	-		Psyr_1333	0.77	-0.4
1,513,298	-		Psyr_1333	0.77	-1.3
1,513,298	-		Psyr_1333	0.77	-1.3
1,513,333	-		Psyr_1333	0.81	+2.0