Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0781 and Psyr_0782 overlap by 38 nucleotides Psyr_0782 and Psyr_0783 overlap by 4 nucleotides
Psyr_0781: Psyr_0781 - Protein-glutamate methylesterase, at 887,924 to 889,000
_0781
Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496
_0782
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Position (kb) 887
888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 886.977 kb on - strand at 887.007 kb on - strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.010 kb on + strand at 887.011 kb on - strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.019 kb on + strand at 887.020 kb on - strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.026 kb on + strand at 887.027 kb on - strand at 887.027 kb on - strand at 887.033 kb on - strand at 887.145 kb on + strand at 887.146 kb on - strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.185 kb on + strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.186 kb on - strand at 887.354 kb on + strand at 887.354 kb on + strand at 887.354 kb on + strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.355 kb on - strand at 887.500 kb on + strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.501 kb on - strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.530 kb on + strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.531 kb on - strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.542 kb on + strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.543 kb on - strand at 887.604 kb on - strand at 887.604 kb on - strand at 887.604 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.657 kb on - strand at 887.666 kb on - strand at 887.666 kb on - strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.679 kb on + strand at 887.680 kb on - strand at 887.680 kb on - strand at 887.680 kb on - strand at 888.219 kb on + strand, within Psyr_0781 at 888.219 kb on + strand, within Psyr_0781 at 888.222 kb on + strand, within Psyr_0781 at 888.223 kb on - strand, within Psyr_0781 at 888.223 kb on - strand, within Psyr_0781 at 888.445 kb on + strand, within Psyr_0781 at 888.446 kb on - strand, within Psyr_0781 at 888.615 kb on - strand, within Psyr_0781 at 888.911 kb on - strand at 888.942 kb on - strand at 888.942 kb on - strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.953 kb on + strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.954 kb on - strand at 888.977 kb on + strand at 888.978 kb on - strand at 888.978 kb on - strand at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.038 kb on + strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.039 kb on - strand, within Psyr_0782 at 889.231 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.275 kb on + strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.276 kb on - strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.297 kb on + strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.298 kb on - strand, within Psyr_0782 at 889.327 kb on - strand, within Psyr_0782 at 889.339 kb on - strand, within Psyr_0782 at 889.389 kb on - strand, within Psyr_0782 at 889.467 kb on + strand at 889.467 kb on + strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.645 kb on - strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.948 kb on - strand, within Psyr_0783
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 886,977 - -2.4 887,007 - +1.0 887,010 + +0.6 887,010 + +1.5 887,010 + -0.8 887,010 + +0.3 887,011 - -1.9 887,019 + -0.5 887,019 + -1.1 887,019 + +0.6 887,019 + +0.9 887,019 + +0.9 887,020 - -0.6 887,026 + -0.7 887,026 + -0.4 887,026 + -0.1 887,026 + -1.4 887,026 + -0.5 887,026 + +0.9 887,027 - +0.1 887,027 - -1.2 887,033 - +0.3 887,145 + -0.4 887,146 - -0.8 887,185 + +0.2 887,185 + +0.2 887,185 + +0.4 887,185 + -2.7 887,185 + -0.5 887,185 + -0.1 887,185 + -1.2 887,185 + +0.6 887,186 - -2.8 887,186 - -0.2 887,186 - -0.3 887,186 - -1.3 887,186 - +1.6 887,186 - -0.9 887,186 - -0.2 887,186 - +0.9 887,186 - -3.2 887,354 + +0.9 887,354 + +0.9 887,354 + +1.8 887,355 - -0.8 887,355 - +0.4 887,355 - -0.0 887,355 - +1.4 887,500 + +0.1 887,501 - +0.4 887,501 - -0.2 887,501 - -1.5 887,501 - -0.1 887,501 - +0.1 887,530 + +1.6 887,530 + +2.0 887,530 + +0.4 887,530 + -0.3 887,530 + -0.2 887,530 + +0.4 887,530 + -0.0 887,530 + -1.6 887,530 + -1.4 887,531 - -0.4 887,531 - +0.4 887,531 - -1.0 887,531 - +0.7 887,531 - +0.3 887,542 + -0.1 887,542 + -1.1 887,542 + -0.3 887,542 + -1.1 887,542 + -0.8 887,542 + +0.1 887,542 + -0.8 887,542 + -0.0 887,542 + -0.1 887,542 + +0.7 887,542 + +0.7 887,543 - -2.4 887,543 - -2.1 887,543 - -2.1 887,543 - +0.2 887,543 - +0.2 887,543 - -0.3 887,543 - +1.1 887,543 - -0.7 887,543 - +1.0 887,543 - +0.2 887,604 - -1.6 887,604 - +0.6 887,604 - -0.2 887,657 - +0.3 887,657 - -0.0 887,657 - +0.7 887,657 - +0.9 887,666 - +1.8 887,666 - +0.6 887,679 + +0.4 887,679 + +0.0 887,679 + -0.9 887,679 + +0.3 887,679 + +1.8 887,680 - -1.4 887,680 - +0.9 887,680 - -0.5 888,219 + Psyr_0781 0.27 +1.2 888,219 + Psyr_0781 0.27 -0.1 888,222 + Psyr_0781 0.28 -0.0 888,223 - Psyr_0781 0.28 -1.5 888,223 - Psyr_0781 0.28 -1.6 888,445 + Psyr_0781 0.48 -3.7 888,446 - Psyr_0781 0.48 -1.8 888,615 - Psyr_0781 0.64 -0.7 888,911 - -0.8 888,942 - +0.6 888,942 - +1.0 888,953 + -1.8 888,953 + -0.6 888,953 + -0.0 888,953 + +0.1 888,954 - +0.6 888,954 - +1.0 888,954 - +1.2 888,977 + +0.0 888,978 - +2.6 888,978 - -0.5 889,038 + Psyr_0782 0.14 -0.3 889,038 + Psyr_0782 0.14 -0.2 889,038 + Psyr_0782 0.14 -0.5 889,038 + Psyr_0782 0.14 -0.2 889,039 - Psyr_0782 0.14 +0.9 889,039 - Psyr_0782 0.14 -0.4 889,039 - Psyr_0782 0.14 +0.1 889,039 - Psyr_0782 0.14 -1.2 889,231 + Psyr_0782 0.50 +0.9 889,275 + Psyr_0782 0.58 -0.5 889,275 + Psyr_0782 0.58 -0.1 889,276 - Psyr_0782 0.59 -2.0 889,276 - Psyr_0782 0.59 +0.0 889,276 - Psyr_0782 0.59 -1.4 889,276 - Psyr_0782 0.59 -1.9 889,297 + Psyr_0782 0.63 -2.0 889,297 + Psyr_0782 0.63 +2.2 889,297 + Psyr_0782 0.63 -0.3 889,297 + Psyr_0782 0.63 +1.0 889,298 - Psyr_0782 0.63 +1.3 889,298 - Psyr_0782 0.63 +1.2 889,298 - Psyr_0782 0.63 -0.0 889,327 - Psyr_0782 0.68 -2.1 889,339 - Psyr_0782 0.70 +0.7 889,389 - Psyr_0782 0.80 -0.2 889,467 + +1.1 889,467 + -0.4 889,468 - -0.8 889,468 - +0.8 889,468 - -2.9 889,578 + Psyr_0783 0.10 -0.6 889,578 + Psyr_0783 0.10 +0.7 889,579 - Psyr_0783 0.11 +0.9 889,579 - Psyr_0783 0.11 +1.6 889,579 - Psyr_0783 0.11 -1.3 889,579 - Psyr_0783 0.11 -1.0 889,644 + Psyr_0783 0.19 -2.4 889,644 + Psyr_0783 0.19 -0.6 889,645 - Psyr_0783 0.19 -0.5 889,794 + Psyr_0783 0.37 -0.6 889,794 + Psyr_0783 0.37 +0.3 889,794 + Psyr_0783 0.37 -0.6 889,794 + Psyr_0783 0.37 +1.2 889,794 + Psyr_0783 0.37 -2.1 889,795 - Psyr_0783 0.37 +0.0 889,795 - Psyr_0783 0.37 +1.5 889,795 - Psyr_0783 0.37 +0.4 889,948 - Psyr_0783 0.56 +0.9
Or see this region's nucleotide sequence