Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0690

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0689 and Psyr_0690 are separated by 33 nucleotidesPsyr_0690 and Psyr_0691 are separated by 204 nucleotides Psyr_0689: Psyr_0689 - methylmalonate-semialdehyde dehydrogenase (acylating), at 792,585 to 794,111 _0689 Psyr_0690: Psyr_0690 - 3-hydroxyisobutyrate dehydrogenase, at 794,145 to 795,032 _0690 Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964 _0691 Position (kb) 794 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 793.317 kb on + strand, within Psyr_0689at 793.317 kb on + strand, within Psyr_0689at 793.387 kb on + strand, within Psyr_0689at 793.427 kb on - strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.749 kb on + strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.750 kb on - strand, within Psyr_0689at 793.925 kb on + strand, within Psyr_0689at 793.926 kb on - strand, within Psyr_0689at 794.002 kb on - strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.025 kb on + strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.026 kb on - strandat 794.174 kb on + strandat 794.365 kb on - strand, within Psyr_0690at 794.762 kb on + strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.763 kb on - strand, within Psyr_0690at 794.796 kb on + strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.797 kb on - strand, within Psyr_0690at 794.955 kb on + strandat 794.956 kb on - strandat 795.030 kb on + strandat 795.030 kb on + strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.031 kb on - strandat 795.291 kb on + strandat 795.292 kb on - strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.388 kb on + strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.389 kb on - strandat 795.405 kb on - strandat 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.570 kb on + strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.571 kb on - strand, within Psyr_0691at 795.675 kb on + strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.676 kb on - strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.739 kb on + strand, within Psyr_0691at 795.740 kb on - strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.761 kb on + strand, within Psyr_0691at 795.921 kb on + strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 795.922 kb on - strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.002 kb on + strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691at 796.003 kb on - strand, within Psyr_0691

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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793,317 + Psyr_0689 0.48 -0.1
793,317 + Psyr_0689 0.48 +0.3
793,387 + Psyr_0689 0.53 +0.8
793,427 - Psyr_0689 0.55 +0.9
793,749 + Psyr_0689 0.76 +1.1
793,749 + Psyr_0689 0.76 -0.1
793,749 + Psyr_0689 0.76 +0.6
793,749 + Psyr_0689 0.76 +1.9
793,749 + Psyr_0689 0.76 -0.3
793,749 + Psyr_0689 0.76 +1.1
793,750 - Psyr_0689 0.76 -0.1
793,750 - Psyr_0689 0.76 +0.4
793,750 - Psyr_0689 0.76 +0.1
793,925 + Psyr_0689 0.88 +1.2
793,926 - Psyr_0689 0.88 +1.3
794,002 - -1.1
794,025 + -0.2
794,025 + +0.5
794,025 + -1.5
794,025 + +0.3
794,025 + -0.9
794,025 + +1.0
794,025 + -1.6
794,026 - +0.3
794,026 - -1.8
794,026 - -2.1
794,026 - -1.5
794,026 - +0.1
794,026 - +1.0
794,026 - -0.4
794,174 + +0.1
794,365 - Psyr_0690 0.25 -1.2
794,762 + Psyr_0690 0.69 +0.8
794,763 - Psyr_0690 0.70 +0.6
794,763 - Psyr_0690 0.70 +0.2
794,796 + Psyr_0690 0.73 -1.4
794,797 - Psyr_0690 0.73 -1.4
794,797 - Psyr_0690 0.73 -1.2
794,797 - Psyr_0690 0.73 -1.3
794,797 - Psyr_0690 0.73 -0.3
794,797 - Psyr_0690 0.73 -0.8
794,797 - Psyr_0690 0.73 -1.4
794,955 + -0.2
794,956 - -0.0
795,030 + +0.4
795,030 + -3.1
795,031 - +0.6
795,031 - +3.0
795,031 - +2.2
795,031 - +1.0
795,031 - -0.2
795,031 - -3.0
795,291 + -0.1
795,292 - -1.1
795,388 + -1.3
795,388 + -0.1
795,388 + +1.0
795,388 + -0.4
795,388 + +1.8
795,389 - +1.1
795,389 - +0.6
795,389 - +0.3
795,389 - -1.1
795,389 - -0.4
795,389 - -2.3
795,405 - +0.5
795,570 + Psyr_0691 0.19 -0.7
795,570 + Psyr_0691 0.19 +0.4
795,570 + Psyr_0691 0.19 +0.3
795,570 + Psyr_0691 0.19 -2.1
795,570 + Psyr_0691 0.19 +0.6
795,570 + Psyr_0691 0.19 +1.5
795,570 + Psyr_0691 0.19 +0.2
795,570 + Psyr_0691 0.19 -3.3
795,570 + Psyr_0691 0.19 -0.2
795,570 + Psyr_0691 0.19 -0.7
795,570 + Psyr_0691 0.19 -2.4
795,571 - Psyr_0691 0.19 -0.6
795,571 - Psyr_0691 0.19 -0.5
795,571 - Psyr_0691 0.19 +0.2
795,571 - Psyr_0691 0.19 +0.4
795,571 - Psyr_0691 0.19 +1.5
795,571 - Psyr_0691 0.19 -0.5
795,571 - Psyr_0691 0.19 -0.8
795,675 + Psyr_0691 0.25 -0.6
795,676 - Psyr_0691 0.25 -1.3
795,676 - Psyr_0691 0.25 -0.1
795,676 - Psyr_0691 0.25 +1.0
795,676 - Psyr_0691 0.25 +1.6
795,739 + Psyr_0691 0.29 +0.3
795,739 + Psyr_0691 0.29 -1.1
795,739 + Psyr_0691 0.29 +0.9
795,740 - Psyr_0691 0.29 -0.2
795,761 + Psyr_0691 0.30 +0.5
795,761 + Psyr_0691 0.30 +1.0
795,921 + Psyr_0691 0.40 +0.3
795,922 - Psyr_0691 0.40 -0.5
795,922 - Psyr_0691 0.40 -0.5
795,922 - Psyr_0691 0.40 +2.3
796,002 + Psyr_0691 0.44 -2.1
796,002 + Psyr_0691 0.44 -0.0
796,003 - Psyr_0691 0.44 +1.3
796,003 - Psyr_0691 0.44 -1.1
796,003 - Psyr_0691 0.44 -0.6
796,003 - Psyr_0691 0.44 -0.2
796,003 - Psyr_0691 0.44 +0.4

Or see this region's nucleotide sequence