Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0554 and Psyr_0555 are separated by 180 nucleotides Psyr_0555 and Psyr_0556 are separated by 334 nucleotides
Psyr_0554: Psyr_0554 - DNA topoisomerase IV subunit A, at 625,908 to 628,163
_0554
Psyr_0555: Psyr_0555 - Protein of unknown function DUF330, at 628,344 to 629,042
_0555
Psyr_0556: Psyr_0556 - Histidine kinase, HAMP region, at 629,377 to 630,918
_0556
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 628.206 kb on + strand at 628.206 kb on + strand at 628.206 kb on + strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.207 kb on - strand at 628.238 kb on - strand at 628.238 kb on - strand at 628.238 kb on - strand at 628.302 kb on + strand at 628.302 kb on + strand at 628.302 kb on + strand at 628.302 kb on + strand at 628.302 kb on + strand at 628.303 kb on - strand at 628.303 kb on - strand at 628.303 kb on - strand at 628.303 kb on - strand at 628.303 kb on - strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.306 kb on + strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.307 kb on - strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.308 kb on + strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.309 kb on - strand at 628.434 kb on + strand, within Psyr_0555 at 628.476 kb on - strand, within Psyr_0555 at 628.519 kb on - strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.612 kb on + strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 628.613 kb on - strand, within Psyr_0555 at 629.143 kb on + strand at 629.213 kb on + strand at 629.213 kb on + strand at 629.213 kb on + strand at 629.214 kb on - strand at 629.214 kb on - strand at 629.214 kb on - strand at 629.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 628,206 + +1.8 628,206 + -1.0 628,206 + -1.0 628,207 - -0.3 628,207 - +0.0 628,207 - +0.3 628,207 - -2.6 628,207 - -1.2 628,238 - -2.2 628,238 - +0.2 628,238 - -1.2 628,302 + +0.5 628,302 + +0.1 628,302 + -0.1 628,302 + +0.9 628,302 + +0.6 628,303 - -0.0 628,303 - -3.9 628,303 - -2.5 628,303 - -1.4 628,303 - -3.5 628,306 + -1.8 628,306 + -1.8 628,306 + +1.3 628,306 + +0.4 628,306 + +0.4 628,306 + -2.1 628,306 + -1.1 628,306 + +1.0 628,306 + +1.2 628,306 + +1.1 628,306 + -0.8 628,306 + +0.7 628,306 + +1.0 628,306 + +1.0 628,306 + +1.0 628,306 + -0.7 628,306 + -0.4 628,306 + +3.8 628,306 + -0.8 628,306 + +0.2 628,306 + -1.3 628,306 + +0.9 628,307 - -0.5 628,307 - -0.4 628,307 - -2.1 628,307 - -0.8 628,307 - -2.5 628,307 - -1.7 628,307 - -2.9 628,307 - -4.0 628,307 - -2.8 628,307 - -1.1 628,307 - +0.2 628,307 - -1.4 628,307 - -1.4 628,307 - -1.4 628,307 - -2.1 628,307 - +0.0 628,308 + +0.1 628,308 + -1.6 628,308 + +0.1 628,308 + -2.1 628,308 + +0.0 628,308 + -2.1 628,308 + -3.6 628,308 + +1.5 628,308 + -0.4 628,309 - -0.9 628,309 - -1.8 628,309 - -1.5 628,309 - -3.2 628,309 - -0.8 628,309 - -1.2 628,309 - -2.7 628,309 - -0.1 628,309 - -2.0 628,434 + Psyr_0555 0.13 -0.7 628,476 - Psyr_0555 0.19 -0.5 628,519 - Psyr_0555 0.25 -2.9 628,612 + Psyr_0555 0.38 +1.7 628,612 + Psyr_0555 0.38 -1.9 628,612 + Psyr_0555 0.38 -1.2 628,612 + Psyr_0555 0.38 +1.1 628,612 + Psyr_0555 0.38 -1.8 628,612 + Psyr_0555 0.38 -0.4 628,612 + Psyr_0555 0.38 +0.2 628,612 + Psyr_0555 0.38 +0.4 628,612 + Psyr_0555 0.38 -1.2 628,612 + Psyr_0555 0.38 -3.0 628,613 - Psyr_0555 0.38 -1.7 628,613 - Psyr_0555 0.38 -0.7 628,613 - Psyr_0555 0.38 -1.1 628,613 - Psyr_0555 0.38 -3.2 628,613 - Psyr_0555 0.38 -1.6 628,613 - Psyr_0555 0.38 -0.3 629,143 + -1.2 629,213 + -0.1 629,213 + +1.2 629,213 + +0.3 629,214 - -0.6 629,214 - +0.6 629,214 - -2.5 629,214 - -1.1
Or see this region's nucleotide sequence