Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0194 and Psyr_0195 are separated by 15 nucleotides Psyr_0195 and Psyr_0196 are separated by 3 nucleotides Psyr_0196 and Psyr_0197 are separated by 397 nucleotides
Psyr_0194: Psyr_0194 - Short-chain dehydrogenase/reductase SDR, at 205,070 to 205,804
_0194
Psyr_0195: Psyr_0195 - conserved hypothetical protein, at 205,820 to 206,563
_0195
Psyr_0196: Psyr_0196 - conserved hypothetical protein, at 206,567 to 209,947
_0196
Psyr_0197: Psyr_0197 - Mg chelatase-related protein, at 210,345 to 211,838
_0197
Position (kb) 206
207
208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 205.733 kb on + strand at 205.733 kb on + strand at 205.733 kb on + strand at 205.734 kb on - strand at 205.734 kb on - strand at 205.734 kb on - strand at 205.787 kb on - strand at 205.800 kb on - strand at 205.800 kb on - strand at 205.887 kb on + strand at 205.887 kb on + strand at 205.888 kb on - strand at 205.996 kb on - strand, within Psyr_0195 at 205.996 kb on - strand, within Psyr_0195 at 206.048 kb on + strand, within Psyr_0195 at 206.065 kb on + strand, within Psyr_0195 at 206.065 kb on + strand, within Psyr_0195 at 206.120 kb on + strand, within Psyr_0195 at 206.199 kb on + strand, within Psyr_0195 at 206.232 kb on + strand, within Psyr_0195 at 206.232 kb on + strand, within Psyr_0195 at 206.232 kb on + strand, within Psyr_0195 at 206.233 kb on - strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.238 kb on + strand, within Psyr_0195 at 206.239 kb on - strand, within Psyr_0195 at 206.239 kb on - strand, within Psyr_0195 at 206.270 kb on - strand, within Psyr_0195 at 206.274 kb on + strand, within Psyr_0195 at 206.274 kb on + strand, within Psyr_0195 at 206.275 kb on - strand, within Psyr_0195 at 206.305 kb on + strand, within Psyr_0195 at 206.305 kb on + strand, within Psyr_0195 at 206.379 kb on + strand, within Psyr_0195 at 206.380 kb on - strand, within Psyr_0195 at 206.390 kb on - strand, within Psyr_0195 at 206.533 kb on + strand at 206.563 kb on + strand at 206.564 kb on - strand at 206.653 kb on + strand at 206.654 kb on - strand at 206.669 kb on + strand at 206.674 kb on + strand at 206.683 kb on - strand at 206.713 kb on + strand at 206.714 kb on - strand at 206.735 kb on + strand at 206.735 kb on + strand at 206.736 kb on - strand at 206.736 kb on - strand at 206.736 kb on - strand at 206.736 kb on - strand at 206.747 kb on + strand at 206.747 kb on + strand at 206.747 kb on + strand at 206.747 kb on + strand at 206.748 kb on - strand at 206.748 kb on - strand at 206.748 kb on - strand at 206.748 kb on - strand at 206.752 kb on - strand at 206.752 kb on - strand at 206.752 kb on - strand at 206.752 kb on - strand at 206.907 kb on - strand, within Psyr_0196 at 206.921 kb on + strand, within Psyr_0196 at 206.933 kb on + strand, within Psyr_0196 at 206.934 kb on - strand, within Psyr_0196 at 206.951 kb on + strand, within Psyr_0196 at 206.951 kb on + strand, within Psyr_0196 at 206.951 kb on + strand, within Psyr_0196 at 206.991 kb on - strand, within Psyr_0196 at 207.061 kb on - strand, within Psyr_0196 at 207.064 kb on - strand, within Psyr_0196 at 207.111 kb on - strand, within Psyr_0196 at 207.111 kb on - strand, within Psyr_0196 at 207.139 kb on + strand, within Psyr_0196 at 207.139 kb on + strand, within Psyr_0196 at 207.140 kb on - strand at 207.236 kb on + strand, within Psyr_0196 at 207.237 kb on - strand, within Psyr_0196 at 207.237 kb on - strand, within Psyr_0196 at 207.237 kb on - strand, within Psyr_0196 at 207.278 kb on + strand, within Psyr_0196 at 207.278 kb on + strand, within Psyr_0196 at 207.278 kb on + strand, within Psyr_0196 at 207.282 kb on + strand, within Psyr_0196 at 207.282 kb on + strand, within Psyr_0196 at 207.283 kb on - strand, within Psyr_0196 at 207.293 kb on + strand, within Psyr_0196 at 207.293 kb on + strand, within Psyr_0196 at 207.294 kb on - strand, within Psyr_0196 at 207.294 kb on - strand, within Psyr_0196 at 207.308 kb on + strand, within Psyr_0196 at 207.308 kb on + strand, within Psyr_0196 at 207.311 kb on - strand, within Psyr_0196 at 207.371 kb on - strand, within Psyr_0196 at 207.371 kb on - strand, within Psyr_0196 at 207.431 kb on + strand, within Psyr_0196 at 207.448 kb on + strand, within Psyr_0196 at 207.448 kb on + strand, within Psyr_0196 at 207.449 kb on - strand, within Psyr_0196 at 207.449 kb on - strand, within Psyr_0196 at 207.482 kb on + strand, within Psyr_0196 at 207.548 kb on + strand, within Psyr_0196 at 207.548 kb on + strand, within Psyr_0196 at 207.549 kb on - strand, within Psyr_0196 at 207.549 kb on - strand, within Psyr_0196 at 207.680 kb on + strand, within Psyr_0196 at 207.698 kb on - strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.703 kb on + strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.704 kb on - strand, within Psyr_0196 at 207.717 kb on + strand, within Psyr_0196 at 207.717 kb on + strand, within Psyr_0196 at 207.718 kb on - strand, within Psyr_0196 at 207.718 kb on - strand, within Psyr_0196 at 207.718 kb on - strand, within Psyr_0196 at 207.718 kb on - strand, within Psyr_0196 at 207.718 kb on - strand, within Psyr_0196 at 207.774 kb on + strand, within Psyr_0196 at 207.775 kb on - strand, within Psyr_0196 at 207.943 kb on - strand, within Psyr_0196 at 208.048 kb on - strand, within Psyr_0196 at 208.048 kb on - strand, within Psyr_0196 at 208.048 kb on - strand, within Psyr_0196 at 208.048 kb on - strand, within Psyr_0196 at 208.159 kb on + strand, within Psyr_0196 at 208.168 kb on + strand, within Psyr_0196 at 208.623 kb on + strand, within Psyr_0196 at 208.623 kb on + strand, within Psyr_0196 at 208.623 kb on + strand, within Psyr_0196 at 208.623 kb on + strand, within Psyr_0196 at 208.628 kb on + strand, within Psyr_0196 at 208.628 kb on + strand, within Psyr_0196 at 208.768 kb on - strand, within Psyr_0196 at 208.998 kb on + strand, within Psyr_0196 at 209.302 kb on + strand, within Psyr_0196 at 209.302 kb on + strand, within Psyr_0196 at 209.302 kb on + strand, within Psyr_0196 at 209.302 kb on + strand, within Psyr_0196 at 209.303 kb on - strand, within Psyr_0196 at 209.303 kb on - strand, within Psyr_0196 at 209.303 kb on - strand, within Psyr_0196 at 209.303 kb on - strand, within Psyr_0196 at 209.422 kb on - strand, within Psyr_0196 at 209.655 kb on + strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.685 kb on + strand at 209.685 kb on + strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.686 kb on - strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.691 kb on + strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.698 kb on - strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.706 kb on + strand at 209.707 kb on - strand at 209.723 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.725 kb on - strand at 209.989 kb on + strand at 209.990 kb on - strand at 209.990 kb on - strand at 210.012 kb on - strand at 210.047 kb on + strand at 210.048 kb on - strand at 210.093 kb on - strand at 210.152 kb on + strand at 210.152 kb on + strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.153 kb on - strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.154 kb on + strand at 210.155 kb on - strand at 210.155 kb on - strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.207 kb on + strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.208 kb on - strand at 210.235 kb on + strand at 210.235 kb on + strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.236 kb on - strand at 210.271 kb on - strand at 210.302 kb on + strand at 210.302 kb on + strand at 210.303 kb on - strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.329 kb on + strand at 210.330 kb on - strand at 210.365 kb on + strand at 210.917 kb on + strand, within Psyr_0197
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 205,733 + +1.3 205,733 + +0.4 205,733 + +2.4 205,734 - -0.1 205,734 - +0.0 205,734 - -0.1 205,787 - +1.6 205,800 - -3.0 205,800 - -0.3 205,887 + -0.2 205,887 + +0.7 205,888 - +0.6 205,996 - Psyr_0195 0.24 -0.2 205,996 - Psyr_0195 0.24 -1.1 206,048 + Psyr_0195 0.31 +0.6 206,065 + Psyr_0195 0.33 +0.3 206,065 + Psyr_0195 0.33 -0.3 206,120 + Psyr_0195 0.40 +0.5 206,199 + Psyr_0195 0.51 -0.6 206,232 + Psyr_0195 0.55 +0.5 206,232 + Psyr_0195 0.55 -1.3 206,232 + Psyr_0195 0.55 -0.1 206,233 - Psyr_0195 0.56 +1.3 206,238 + Psyr_0195 0.56 -1.4 206,238 + Psyr_0195 0.56 +2.0 206,238 + Psyr_0195 0.56 -3.1 206,238 + Psyr_0195 0.56 +0.8 206,238 + Psyr_0195 0.56 -0.2 206,238 + Psyr_0195 0.56 +1.2 206,239 - Psyr_0195 0.56 +1.5 206,239 - Psyr_0195 0.56 -3.0 206,270 - Psyr_0195 0.60 +0.5 206,274 + Psyr_0195 0.61 +2.7 206,274 + Psyr_0195 0.61 -0.3 206,275 - Psyr_0195 0.61 +0.0 206,305 + Psyr_0195 0.65 -0.1 206,305 + Psyr_0195 0.65 -0.1 206,379 + Psyr_0195 0.75 +0.4 206,380 - Psyr_0195 0.75 +2.3 206,390 - Psyr_0195 0.77 -0.6 206,533 + -1.1 206,563 + +0.9 206,564 - +0.3 206,653 + -1.0 206,654 - +0.4 206,669 + +2.0 206,674 + -0.8 206,683 - +1.3 206,713 + +0.7 206,714 - +0.1 206,735 + -0.1 206,735 + +0.9 206,736 - +1.3 206,736 - +2.0 206,736 - +0.0 206,736 - -1.5 206,747 + +0.1 206,747 + +1.3 206,747 + +1.2 206,747 + +1.2 206,748 - -0.1 206,748 - +0.8 206,748 - -0.1 206,748 - +0.1 206,752 - -1.8 206,752 - -1.3 206,752 - +0.3 206,752 - -1.3 206,907 - Psyr_0196 0.10 -0.2 206,921 + Psyr_0196 0.10 +0.4 206,933 + Psyr_0196 0.11 -0.5 206,934 - Psyr_0196 0.11 -1.0 206,951 + Psyr_0196 0.11 -1.1 206,951 + Psyr_0196 0.11 -1.1 206,951 + Psyr_0196 0.11 -2.4 206,991 - Psyr_0196 0.13 -2.1 207,061 - Psyr_0196 0.15 -0.8 207,064 - Psyr_0196 0.15 +1.0 207,111 - Psyr_0196 0.16 +1.5 207,111 - Psyr_0196 0.16 +2.0 207,139 + Psyr_0196 0.17 +0.2 207,139 + Psyr_0196 0.17 -2.1 207,140 - +1.3 207,236 + Psyr_0196 0.20 -2.3 207,237 - Psyr_0196 0.20 -0.4 207,237 - Psyr_0196 0.20 -2.6 207,237 - Psyr_0196 0.20 -0.0 207,278 + Psyr_0196 0.21 +0.0 207,278 + Psyr_0196 0.21 +1.9 207,278 + Psyr_0196 0.21 -0.3 207,282 + Psyr_0196 0.21 +0.6 207,282 + Psyr_0196 0.21 -1.9 207,283 - Psyr_0196 0.21 -0.3 207,293 + Psyr_0196 0.21 +1.0 207,293 + Psyr_0196 0.21 +2.5 207,294 - Psyr_0196 0.22 -0.2 207,294 - Psyr_0196 0.22 +0.3 207,308 + Psyr_0196 0.22 +0.5 207,308 + Psyr_0196 0.22 +0.2 207,311 - Psyr_0196 0.22 -0.2 207,371 - Psyr_0196 0.24 +2.0 207,371 - Psyr_0196 0.24 +1.0 207,431 + Psyr_0196 0.26 -0.3 207,448 + Psyr_0196 0.26 +0.4 207,448 + Psyr_0196 0.26 +0.3 207,449 - Psyr_0196 0.26 -1.0 207,449 - Psyr_0196 0.26 -0.1 207,482 + Psyr_0196 0.27 -0.7 207,548 + Psyr_0196 0.29 +0.3 207,548 + Psyr_0196 0.29 +0.3 207,549 - Psyr_0196 0.29 +0.3 207,549 - Psyr_0196 0.29 -0.6 207,680 + Psyr_0196 0.33 -1.5 207,698 - Psyr_0196 0.33 +0.5 207,703 + Psyr_0196 0.34 +0.5 207,703 + Psyr_0196 0.34 -1.0 207,703 + Psyr_0196 0.34 +1.0 207,703 + Psyr_0196 0.34 -0.1 207,703 + Psyr_0196 0.34 +0.4 207,703 + Psyr_0196 0.34 -0.4 207,703 + Psyr_0196 0.34 -0.9 207,703 + Psyr_0196 0.34 +0.9 207,704 - Psyr_0196 0.34 +2.3 207,704 - Psyr_0196 0.34 -0.3 207,704 - Psyr_0196 0.34 +0.4 207,704 - Psyr_0196 0.34 +1.5 207,704 - Psyr_0196 0.34 -0.4 207,704 - Psyr_0196 0.34 +1.3 207,704 - Psyr_0196 0.34 +0.7 207,704 - Psyr_0196 0.34 +0.6 207,704 - Psyr_0196 0.34 +1.1 207,704 - Psyr_0196 0.34 -1.2 207,704 - Psyr_0196 0.34 -0.1 207,717 + Psyr_0196 0.34 +0.3 207,717 + Psyr_0196 0.34 +0.2 207,718 - Psyr_0196 0.34 -0.1 207,718 - Psyr_0196 0.34 -0.3 207,718 - Psyr_0196 0.34 -0.9 207,718 - Psyr_0196 0.34 -0.9 207,718 - Psyr_0196 0.34 -0.9 207,774 + Psyr_0196 0.36 -0.2 207,775 - Psyr_0196 0.36 +1.3 207,943 - Psyr_0196 0.41 +0.6 208,048 - Psyr_0196 0.44 +1.0 208,048 - Psyr_0196 0.44 -1.3 208,048 - Psyr_0196 0.44 +0.8 208,048 - Psyr_0196 0.44 -3.1 208,159 + Psyr_0196 0.47 -0.4 208,168 + Psyr_0196 0.47 +0.4 208,623 + Psyr_0196 0.61 +2.3 208,623 + Psyr_0196 0.61 +0.0 208,623 + Psyr_0196 0.61 +1.2 208,623 + Psyr_0196 0.61 +0.4 208,628 + Psyr_0196 0.61 +0.5 208,628 + Psyr_0196 0.61 +0.9 208,768 - Psyr_0196 0.65 +1.9 208,998 + Psyr_0196 0.72 +1.7 209,302 + Psyr_0196 0.81 +1.2 209,302 + Psyr_0196 0.81 -1.1 209,302 + Psyr_0196 0.81 +1.6 209,302 + Psyr_0196 0.81 +0.9 209,303 - Psyr_0196 0.81 -0.1 209,303 - Psyr_0196 0.81 +0.4 209,303 - Psyr_0196 0.81 -3.0 209,303 - Psyr_0196 0.81 -1.5 209,422 - Psyr_0196 0.84 -2.1 209,655 + +0.5 209,656 - -0.6 209,656 - -1.1 209,656 - -0.6 209,656 - -2.9 209,656 - +1.3 209,656 - +1.0 209,656 - -0.6 209,656 - -1.0 209,656 - -0.5 209,656 - -2.1 209,685 + -1.4 209,685 + -0.1 209,686 - -1.4 209,686 - +2.3 209,686 - +2.9 209,686 - +1.4 209,691 + +1.7 209,691 + +1.3 209,691 + -2.1 209,691 + -0.5 209,691 + +0.0 209,691 + -1.1 209,691 + +0.7 209,691 + -0.5 209,691 + -1.3 209,691 + +0.6 209,691 + +0.5 209,691 + -1.3 209,691 + +1.3 209,691 + -0.9 209,691 + -0.2 209,691 + +0.1 209,691 + -2.3 209,691 + -1.5 209,691 + +0.5 209,691 + -0.8 209,691 + -0.4 209,691 + +0.4 209,691 + +0.7 209,691 + -1.2 209,691 + +0.7 209,691 + -0.3 209,691 + -2.0 209,691 + -0.4 209,691 + +0.9 209,691 + -0.3 209,691 + -1.4 209,691 + -0.2 209,691 + -1.9 209,691 + -0.2 209,691 + +0.0 209,691 + -0.7 209,691 + -1.0 209,691 + -0.7 209,691 + +0.3 209,691 + -1.2 209,691 + -1.1 209,691 + +1.5 209,691 + -0.9 209,691 + -0.9 209,691 + +0.5 209,691 + -2.0 209,698 - -1.6 209,698 - +0.7 209,698 - +1.6 209,706 + -0.9 209,706 + +2.0 209,706 + +0.4 209,706 + -1.3 209,706 + -1.3 209,706 + -0.9 209,707 - -0.5 209,723 - -0.5 209,725 - +0.9 209,725 - +1.0 209,725 - -1.3 209,725 - -1.1 209,725 - +2.7 209,725 - +0.2 209,989 + +1.6 209,990 - +0.7 209,990 - -0.3 210,012 - +1.0 210,047 + +0.2 210,048 - -1.9 210,093 - -1.9 210,152 + -0.3 210,152 + +0.7 210,153 - +0.7 210,153 - +1.0 210,153 - +1.0 210,154 + -0.5 210,154 + +0.3 210,154 + +1.3 210,155 - +0.9 210,155 - +0.2 210,207 + -2.5 210,207 + -0.4 210,207 + +0.6 210,207 + -0.5 210,207 + -1.0 210,207 + -0.5 210,208 - -1.3 210,208 - -0.1 210,208 - +1.8 210,235 + +0.7 210,235 + -0.4 210,236 - -0.3 210,236 - -2.1 210,236 - -0.9 210,271 - -1.0 210,302 + -2.1 210,302 + +0.6 210,303 - +1.8 210,329 + -0.7 210,329 + +1.0 210,329 + +0.8 210,330 - +0.1 210,365 + -0.7 210,917 + Psyr_0197 0.38 -1.0
Or see this region's nucleotide sequence