Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22310

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS22305 and HSERO_RS22310 are separated by 191 nucleotidesHSERO_RS22310 and HSERO_RS22315 are separated by 193 nucleotides HSERO_RS22305: HSERO_RS22305 - oxidoreductase, at 5,100,318 to 5,101,067 _RS22305 HSERO_RS22310: HSERO_RS22310 - LysR family transcriptional regulator, at 5,101,259 to 5,102,158 _RS22310 HSERO_RS22315: HSERO_RS22315 - hypothetical protein, at 5,102,352 to 5,103,296 _RS22315 Position (kb) 5101 5102 5103Strain fitness (log2 ratio) -2 -1 0 1at 5100.358 kb on - strandat 5100.475 kb on - strand, within HSERO_RS22305at 5100.620 kb on + strand, within HSERO_RS22305at 5100.641 kb on + strand, within HSERO_RS22305at 5100.702 kb on + strand, within HSERO_RS22305at 5100.746 kb on - strand, within HSERO_RS22305at 5100.875 kb on + strand, within HSERO_RS22305at 5100.946 kb on - strand, within HSERO_RS22305at 5101.002 kb on + strandat 5101.142 kb on + strandat 5101.143 kb on - strandat 5101.256 kb on + strandat 5101.512 kb on - strand, within HSERO_RS22310at 5101.758 kb on - strand, within HSERO_RS22310at 5101.917 kb on + strand, within HSERO_RS22310at 5102.096 kb on + strandat 5102.324 kb on + strandat 5102.381 kb on + strandat 5102.560 kb on - strand, within HSERO_RS22315at 5102.614 kb on - strand, within HSERO_RS22315at 5102.614 kb on - strand, within HSERO_RS22315at 5102.768 kb on + strand, within HSERO_RS22315at 5103.119 kb on + strand, within HSERO_RS22315

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days
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5,100,358 - -2.1
5,100,475 - HSERO_RS22305 0.21 +0.6
5,100,620 + HSERO_RS22305 0.40 +0.1
5,100,641 + HSERO_RS22305 0.43 +0.0
5,100,702 + HSERO_RS22305 0.51 -0.5
5,100,746 - HSERO_RS22305 0.57 +0.4
5,100,875 + HSERO_RS22305 0.74 -0.2
5,100,946 - HSERO_RS22305 0.84 +0.2
5,101,002 + +0.2
5,101,142 + -0.0
5,101,143 - +0.2
5,101,256 + -0.9
5,101,512 - HSERO_RS22310 0.28 +0.8
5,101,758 - HSERO_RS22310 0.55 -0.0
5,101,917 + HSERO_RS22310 0.73 +0.1
5,102,096 + -0.2
5,102,324 + -0.8
5,102,381 + -0.2
5,102,560 - HSERO_RS22315 0.22 -0.8
5,102,614 - HSERO_RS22315 0.28 +0.1
5,102,614 - HSERO_RS22315 0.28 -0.0
5,102,768 + HSERO_RS22315 0.44 -0.3
5,103,119 + HSERO_RS22315 0.81 -0.3

Or see this region's nucleotide sequence