Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21025 and HSERO_RS21030 are separated by 304 nucleotides HSERO_RS21030 and HSERO_RS21035 are separated by 74 nucleotides HSERO_RS21035 and HSERO_RS21040 are separated by 4 nucleotides HSERO_RS21040 and HSERO_RS21045 overlap by 14 nucleotides
HSERO_RS21025: HSERO_RS21025 - hypothetical protein, at 4,810,481 to 4,811,197
_RS21025
HSERO_RS21030: HSERO_RS21030 - hypothetical protein, at 4,811,502 to 4,812,011
_RS21030
HSERO_RS21035: HSERO_RS21035 - hypothetical protein, at 4,812,086 to 4,812,700
_RS21035
HSERO_RS21040: HSERO_RS21040 - 3-oxoacyl-ACP synthase, at 4,812,705 to 4,813,649
_RS21040
HSERO_RS21045: HSERO_RS21045 - acyl carrier protein, at 4,813,636 to 4,813,863
_RS21045
Position (kb) 4812
4813 Strain fitness (log2 ratio) -1
0
1 at 4811.219 kb on - strand at 4811.245 kb on + strand at 4811.943 kb on + strand, within HSERO_RS21030 at 4811.983 kb on + strand at 4812.130 kb on + strand at 4812.263 kb on + strand, within HSERO_RS21035 at 4812.289 kb on - strand, within HSERO_RS21035 at 4812.426 kb on - strand, within HSERO_RS21035 at 4812.663 kb on + strand at 4812.695 kb on + strand at 4812.740 kb on + strand at 4812.767 kb on - strand at 4812.844 kb on - strand, within HSERO_RS21040 at 4813.028 kb on - strand, within HSERO_RS21040 at 4813.086 kb on - strand, within HSERO_RS21040 at 4813.100 kb on + strand, within HSERO_RS21040 at 4813.322 kb on - strand, within HSERO_RS21040 at 4813.333 kb on + strand, within HSERO_RS21040 at 4813.585 kb on + strand at 4813.598 kb on - strand at 4813.691 kb on - strand, within HSERO_RS21045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 4,811,219 - +0.4 4,811,245 + -0.4 4,811,943 + HSERO_RS21030 0.86 +0.4 4,811,983 + +0.9 4,812,130 + -0.1 4,812,263 + HSERO_RS21035 0.29 +0.2 4,812,289 - HSERO_RS21035 0.33 +0.4 4,812,426 - HSERO_RS21035 0.55 +0.5 4,812,663 + +0.1 4,812,695 + +0.1 4,812,740 + -0.5 4,812,767 - +0.2 4,812,844 - HSERO_RS21040 0.15 +0.5 4,813,028 - HSERO_RS21040 0.34 +0.5 4,813,086 - HSERO_RS21040 0.40 +0.4 4,813,100 + HSERO_RS21040 0.42 -0.1 4,813,322 - HSERO_RS21040 0.65 +0.2 4,813,333 + HSERO_RS21040 0.66 +0.8 4,813,585 + -0.3 4,813,598 - +1.2 4,813,691 - HSERO_RS21045 0.24 -0.6
Or see this region's nucleotide sequence