Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20895 and HSERO_RS20900 overlap by 4 nucleotides HSERO_RS20900 and HSERO_RS20905 are separated by 56 nucleotides HSERO_RS20905 and HSERO_RS20910 overlap by 2 nucleotides
HSERO_RS20895: HSERO_RS20895 - hypothetical protein, at 4,781,725 to 4,782,639
_RS20895
HSERO_RS20900: HSERO_RS20900 - type IV pilus biogenesis protein, at 4,782,636 to 4,783,196
_RS20900
HSERO_RS20905: HSERO_RS20905 - hypothetical protein, at 4,783,253 to 4,783,762
_RS20905
HSERO_RS20910: HSERO_RS20910 - hypothetical protein, at 4,783,761 to 4,784,303
_RS20910
Position (kb) 4782
4783
4784 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4781.715 kb on + strand at 4781.723 kb on - strand at 4781.723 kb on - strand at 4781.723 kb on - strand at 4781.735 kb on - strand at 4781.740 kb on - strand at 4781.771 kb on + strand at 4781.785 kb on - strand at 4781.862 kb on + strand, within HSERO_RS20895 at 4782.007 kb on + strand, within HSERO_RS20895 at 4782.043 kb on + strand, within HSERO_RS20895 at 4782.043 kb on + strand, within HSERO_RS20895 at 4782.051 kb on - strand, within HSERO_RS20895 at 4782.068 kb on + strand, within HSERO_RS20895 at 4782.408 kb on + strand, within HSERO_RS20895 at 4782.413 kb on + strand, within HSERO_RS20895 at 4782.421 kb on - strand, within HSERO_RS20895 at 4782.465 kb on - strand, within HSERO_RS20895 at 4782.596 kb on + strand at 4782.604 kb on - strand at 4782.618 kb on + strand at 4782.618 kb on + strand at 4782.626 kb on - strand at 4782.626 kb on - strand at 4782.633 kb on + strand at 4782.633 kb on + strand at 4782.633 kb on + strand at 4782.641 kb on - strand at 4782.646 kb on - strand at 4782.652 kb on + strand at 4782.794 kb on + strand, within HSERO_RS20900 at 4782.949 kb on - strand, within HSERO_RS20900 at 4782.957 kb on - strand, within HSERO_RS20900 at 4783.099 kb on + strand, within HSERO_RS20900 at 4783.113 kb on + strand, within HSERO_RS20900 at 4783.230 kb on + strand at 4783.235 kb on + strand at 4783.328 kb on - strand, within HSERO_RS20905 at 4783.374 kb on - strand, within HSERO_RS20905 at 4783.468 kb on - strand, within HSERO_RS20905 at 4783.477 kb on + strand, within HSERO_RS20905 at 4783.485 kb on - strand, within HSERO_RS20905 at 4783.552 kb on + strand, within HSERO_RS20905 at 4783.560 kb on - strand, within HSERO_RS20905 at 4783.654 kb on + strand, within HSERO_RS20905 at 4783.715 kb on - strand at 4783.739 kb on - strand at 4783.786 kb on - strand at 4783.816 kb on + strand, within HSERO_RS20910 at 4783.822 kb on - strand, within HSERO_RS20910 at 4784.131 kb on + strand, within HSERO_RS20910 at 4784.152 kb on + strand, within HSERO_RS20910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 4,781,715 + +0.2 4,781,723 - -0.8 4,781,723 - -0.0 4,781,723 - -0.3 4,781,735 - -3.6 4,781,740 - -0.2 4,781,771 + -0.1 4,781,785 - -0.1 4,781,862 + HSERO_RS20895 0.15 +0.1 4,782,007 + HSERO_RS20895 0.31 -0.4 4,782,043 + HSERO_RS20895 0.35 -0.4 4,782,043 + HSERO_RS20895 0.35 -0.0 4,782,051 - HSERO_RS20895 0.36 -0.2 4,782,068 + HSERO_RS20895 0.37 -0.4 4,782,408 + HSERO_RS20895 0.75 +0.3 4,782,413 + HSERO_RS20895 0.75 +0.3 4,782,421 - HSERO_RS20895 0.76 -0.4 4,782,465 - HSERO_RS20895 0.81 -0.2 4,782,596 + +0.0 4,782,604 - +0.5 4,782,618 + +0.2 4,782,618 + +0.1 4,782,626 - +0.5 4,782,626 - +0.2 4,782,633 + -0.2 4,782,633 + -0.5 4,782,633 + +0.2 4,782,641 - -0.6 4,782,646 - +0.1 4,782,652 + +0.6 4,782,794 + HSERO_RS20900 0.28 +0.4 4,782,949 - HSERO_RS20900 0.56 +0.0 4,782,957 - HSERO_RS20900 0.57 +0.8 4,783,099 + HSERO_RS20900 0.83 +0.2 4,783,113 + HSERO_RS20900 0.85 +0.2 4,783,230 + -0.2 4,783,235 + -0.6 4,783,328 - HSERO_RS20905 0.15 -0.2 4,783,374 - HSERO_RS20905 0.24 +0.0 4,783,468 - HSERO_RS20905 0.42 -0.1 4,783,477 + HSERO_RS20905 0.44 -0.1 4,783,485 - HSERO_RS20905 0.45 +0.2 4,783,552 + HSERO_RS20905 0.59 -0.3 4,783,560 - HSERO_RS20905 0.60 +0.0 4,783,654 + HSERO_RS20905 0.79 +0.2 4,783,715 - +0.6 4,783,739 - -0.1 4,783,786 - +1.3 4,783,816 + HSERO_RS20910 0.10 +0.1 4,783,822 - HSERO_RS20910 0.11 +0.2 4,784,131 + HSERO_RS20910 0.68 -0.1 4,784,152 + HSERO_RS20910 0.72 +0.8
Or see this region's nucleotide sequence