Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19080 and HSERO_RS19085 overlap by 4 nucleotides HSERO_RS19085 and HSERO_RS19090 are separated by 327 nucleotides HSERO_RS19090 and HSERO_RS19095 are separated by 361 nucleotides
HSERO_RS19080: HSERO_RS19080 - hypothetical protein, at 4,377,550 to 4,378,119
_RS19080
HSERO_RS19085: HSERO_RS19085 - DNA-binding protein, at 4,378,116 to 4,378,574
_RS19085
HSERO_RS19090: HSERO_RS19090 - C4-dicarboxylate ABC transporter, at 4,378,902 to 4,380,197
_RS19090
HSERO_RS19095: HSERO_RS19095 - glycolate oxidase, at 4,380,559 to 4,381,803
_RS19095
Position (kb) 4378
4379
4380
4381 Strain fitness (log2 ratio) -1
0
1 at 4377.990 kb on + strand, within HSERO_RS19080 at 4378.006 kb on - strand, within HSERO_RS19080 at 4378.025 kb on + strand, within HSERO_RS19080 at 4378.033 kb on - strand, within HSERO_RS19080 at 4378.173 kb on + strand, within HSERO_RS19085 at 4378.173 kb on + strand, within HSERO_RS19085 at 4378.181 kb on - strand, within HSERO_RS19085 at 4378.221 kb on - strand, within HSERO_RS19085 at 4378.656 kb on + strand at 4378.664 kb on - strand at 4378.664 kb on - strand at 4378.855 kb on + strand at 4378.881 kb on + strand at 4379.488 kb on + strand, within HSERO_RS19090 at 4379.697 kb on + strand, within HSERO_RS19090 at 4379.781 kb on - strand, within HSERO_RS19090 at 4380.067 kb on - strand, within HSERO_RS19090 at 4380.314 kb on + strand at 4380.389 kb on + strand at 4380.402 kb on + strand at 4380.437 kb on + strand at 4380.714 kb on + strand, within HSERO_RS19095 at 4380.886 kb on - strand, within HSERO_RS19095 at 4380.908 kb on - strand, within HSERO_RS19095 at 4380.913 kb on - strand, within HSERO_RS19095 at 4380.939 kb on + strand, within HSERO_RS19095
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 4,377,990 + HSERO_RS19080 0.77 -0.4 4,378,006 - HSERO_RS19080 0.80 -0.5 4,378,025 + HSERO_RS19080 0.83 +0.0 4,378,033 - HSERO_RS19080 0.85 -0.5 4,378,173 + HSERO_RS19085 0.12 +0.0 4,378,173 + HSERO_RS19085 0.12 -0.5 4,378,181 - HSERO_RS19085 0.14 -0.0 4,378,221 - HSERO_RS19085 0.23 +0.0 4,378,656 + +0.2 4,378,664 - +0.4 4,378,664 - +0.0 4,378,855 + -0.4 4,378,881 + +0.3 4,379,488 + HSERO_RS19090 0.45 +1.3 4,379,697 + HSERO_RS19090 0.61 +0.8 4,379,781 - HSERO_RS19090 0.68 +1.4 4,380,067 - HSERO_RS19090 0.90 -0.4 4,380,314 + +0.3 4,380,389 + +0.5 4,380,402 + -0.1 4,380,437 + -0.1 4,380,714 + HSERO_RS19095 0.12 +0.0 4,380,886 - HSERO_RS19095 0.26 -0.4 4,380,908 - HSERO_RS19095 0.28 -0.1 4,380,913 - HSERO_RS19095 0.28 -1.1 4,380,939 + HSERO_RS19095 0.31 -0.8
Or see this region's nucleotide sequence