Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08590 and HSERO_RS08600 are separated by 324 nucleotides HSERO_RS08600 and HSERO_RS08605 are separated by 105 nucleotides HSERO_RS08605 and HSERO_RS08610 are separated by 20 nucleotides HSERO_RS08610 and HSERO_RS08615 are separated by 136 nucleotides
HSERO_RS08590: HSERO_RS08590 - pseudouridine synthase, at 1,955,059 to 1,955,781
_RS08590
HSERO_RS08600: HSERO_RS08600 - hypothetical protein, at 1,956,106 to 1,956,306
_RS08600
HSERO_RS08605: HSERO_RS08605 - Hsp33 chaperonin, at 1,956,412 to 1,957,341
_RS08605
HSERO_RS08610: HSERO_RS08610 - anhydrase, at 1,957,362 to 1,957,886
_RS08610
HSERO_RS08615: HSERO_RS08615 - hypothetical protein, at 1,958,023 to 1,958,868
_RS08615
Position (kb) 1956
1957
1958 Strain fitness (log2 ratio) -1
0
1
2 at 1955.496 kb on + strand, within HSERO_RS08590 at 1955.511 kb on + strand, within HSERO_RS08590 at 1955.618 kb on - strand, within HSERO_RS08590 at 1955.715 kb on + strand at 1955.882 kb on - strand at 1955.958 kb on - strand at 1956.015 kb on - strand at 1956.407 kb on - strand at 1956.499 kb on - strand at 1957.136 kb on + strand, within HSERO_RS08605 at 1957.144 kb on - strand, within HSERO_RS08605 at 1957.414 kb on - strand at 1957.414 kb on - strand at 1957.414 kb on - strand at 1957.643 kb on + strand, within HSERO_RS08610 at 1957.678 kb on - strand, within HSERO_RS08610 at 1957.692 kb on + strand, within HSERO_RS08610 at 1957.768 kb on - strand, within HSERO_RS08610 at 1957.821 kb on - strand, within HSERO_RS08610 at 1957.860 kb on + strand at 1957.960 kb on - strand at 1958.296 kb on + strand, within HSERO_RS08615
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 1,955,496 + HSERO_RS08590 0.60 -0.8 1,955,511 + HSERO_RS08590 0.63 +0.5 1,955,618 - HSERO_RS08590 0.77 -0.7 1,955,715 + -0.4 1,955,882 - -1.3 1,955,958 - +0.1 1,956,015 - +0.1 1,956,407 - +0.3 1,956,499 - -0.2 1,957,136 + HSERO_RS08605 0.78 +2.0 1,957,144 - HSERO_RS08605 0.79 +0.3 1,957,414 - +0.1 1,957,414 - +0.1 1,957,414 - -0.2 1,957,643 + HSERO_RS08610 0.54 -0.0 1,957,678 - HSERO_RS08610 0.60 +0.5 1,957,692 + HSERO_RS08610 0.63 +0.0 1,957,768 - HSERO_RS08610 0.77 -0.1 1,957,821 - HSERO_RS08610 0.87 -0.5 1,957,860 + -0.4 1,957,960 - -0.6 1,958,296 + HSERO_RS08615 0.32 +0.0
Or see this region's nucleotide sequence