Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08485 and HSERO_RS08490 are separated by 131 nucleotides HSERO_RS08490 and HSERO_RS08495 are separated by 306 nucleotides HSERO_RS08495 and HSERO_RS08500 are separated by 592 nucleotides
HSERO_RS08485: HSERO_RS08485 - hypothetical protein, at 1,931,540 to 1,931,785
_RS08485
HSERO_RS08490: HSERO_RS08490 - chemotaxis protein CheY, at 1,931,917 to 1,932,297
_RS08490
HSERO_RS08495: HSERO_RS08495 - hypothetical protein, at 1,932,604 to 1,933,485
_RS08495
HSERO_RS08500: HSERO_RS08500 - hypothetical protein, at 1,934,078 to 1,935,895
_RS08500
Position (kb) 1932
1933
1934 Strain fitness (log2 ratio) -1
0
1 at 1931.925 kb on + strand at 1931.991 kb on - strand, within HSERO_RS08490 at 1932.292 kb on + strand at 1932.319 kb on - strand at 1932.684 kb on + strand at 1932.684 kb on + strand at 1932.692 kb on - strand at 1932.994 kb on + strand, within HSERO_RS08495 at 1933.049 kb on + strand, within HSERO_RS08495 at 1933.080 kb on - strand, within HSERO_RS08495 at 1933.083 kb on + strand, within HSERO_RS08495 at 1933.184 kb on + strand, within HSERO_RS08495 at 1933.315 kb on - strand, within HSERO_RS08495 at 1933.767 kb on + strand at 1933.840 kb on + strand at 1933.918 kb on - strand at 1934.149 kb on + strand at 1934.229 kb on + strand at 1934.325 kb on - strand, within HSERO_RS08500 at 1934.381 kb on - strand, within HSERO_RS08500
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 1,931,925 + -0.5 1,931,991 - HSERO_RS08490 0.19 -0.8 1,932,292 + +0.4 1,932,319 - -0.3 1,932,684 + -0.6 1,932,684 + -0.0 1,932,692 - +0.4 1,932,994 + HSERO_RS08495 0.44 +0.6 1,933,049 + HSERO_RS08495 0.50 +0.3 1,933,080 - HSERO_RS08495 0.54 +0.5 1,933,083 + HSERO_RS08495 0.54 +0.0 1,933,184 + HSERO_RS08495 0.66 +0.5 1,933,315 - HSERO_RS08495 0.81 +0.2 1,933,767 + +0.2 1,933,840 + -0.2 1,933,918 - -0.1 1,934,149 + -0.0 1,934,229 + +0.7 1,934,325 - HSERO_RS08500 0.14 -1.6 1,934,381 - HSERO_RS08500 0.17 +0.1
Or see this region's nucleotide sequence