Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS08385 and HSERO_RS08390 are separated by 12 nucleotides HSERO_RS08390 and HSERO_RS08395 are separated by 168 nucleotides HSERO_RS08395 and HSERO_RS08400 are separated by 58 nucleotides HSERO_RS08400 and HSERO_RS08405 are separated by 125 nucleotides
HSERO_RS08385: HSERO_RS08385 - anaerobic (selenocysteine-containing) formate dehydrogenase, at 1,909,337 to 1,911,664
_RS08385
HSERO_RS08390: HSERO_RS08390 - transcriptional regulator, at 1,911,677 to 1,911,961
_RS08390
HSERO_RS08395: HSERO_RS08395 - 2-aminoadipate aminotransferase, at 1,912,130 to 1,913,572
_RS08395
HSERO_RS08400: HSERO_RS08400 - glutathione S-transferase, at 1,913,631 to 1,914,302
_RS08400
HSERO_RS08405: HSERO_RS08405 - membrane protein, at 1,914,428 to 1,915,756
_RS08405
Position (kb) 1912
1913
1914 Strain fitness (log2 ratio) -1
0
1 at 1911.173 kb on - strand, within HSERO_RS08385 at 1911.228 kb on - strand, within HSERO_RS08385 at 1911.675 kb on + strand at 1911.711 kb on - strand, within HSERO_RS08390 at 1912.091 kb on - strand at 1912.093 kb on + strand at 1912.093 kb on + strand at 1912.194 kb on - strand at 1912.521 kb on + strand, within HSERO_RS08395 at 1912.529 kb on - strand, within HSERO_RS08395 at 1912.622 kb on + strand, within HSERO_RS08395 at 1912.630 kb on - strand, within HSERO_RS08395 at 1912.672 kb on - strand, within HSERO_RS08395 at 1912.694 kb on + strand, within HSERO_RS08395 at 1912.719 kb on + strand, within HSERO_RS08395 at 1913.290 kb on + strand, within HSERO_RS08395 at 1913.349 kb on + strand, within HSERO_RS08395 at 1913.591 kb on + strand at 1913.752 kb on + strand, within HSERO_RS08400 at 1913.770 kb on - strand, within HSERO_RS08400 at 1913.833 kb on - strand, within HSERO_RS08400 at 1913.847 kb on - strand, within HSERO_RS08400 at 1913.987 kb on + strand, within HSERO_RS08400 at 1914.121 kb on - strand, within HSERO_RS08400 at 1914.158 kb on - strand, within HSERO_RS08400 at 1914.205 kb on - strand, within HSERO_RS08400 at 1914.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 1,911,173 - HSERO_RS08385 0.79 -0.1 1,911,228 - HSERO_RS08385 0.81 -0.3 1,911,675 + -0.0 1,911,711 - HSERO_RS08390 0.12 -1.7 1,912,091 - -0.3 1,912,093 + +1.3 1,912,093 + +0.3 1,912,194 - +0.2 1,912,521 + HSERO_RS08395 0.27 +0.4 1,912,529 - HSERO_RS08395 0.28 +0.5 1,912,622 + HSERO_RS08395 0.34 +0.0 1,912,630 - HSERO_RS08395 0.35 +0.0 1,912,672 - HSERO_RS08395 0.38 +0.2 1,912,694 + HSERO_RS08395 0.39 +0.5 1,912,719 + HSERO_RS08395 0.41 -0.1 1,913,290 + HSERO_RS08395 0.80 +0.6 1,913,349 + HSERO_RS08395 0.84 +0.7 1,913,591 + -0.1 1,913,752 + HSERO_RS08400 0.18 -0.4 1,913,770 - HSERO_RS08400 0.21 -1.2 1,913,833 - HSERO_RS08400 0.30 +0.3 1,913,847 - HSERO_RS08400 0.32 -0.0 1,913,987 + HSERO_RS08400 0.53 -0.3 1,914,121 - HSERO_RS08400 0.73 +0.8 1,914,158 - HSERO_RS08400 0.78 -0.1 1,914,205 - HSERO_RS08400 0.85 -0.2 1,914,288 + -0.5
Or see this region's nucleotide sequence