Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04015 and HSERO_RS04020 are separated by 246 nucleotides HSERO_RS04020 and HSERO_RS04025 are separated by 4 nucleotides HSERO_RS04025 and HSERO_RS04030 overlap by 4 nucleotides
HSERO_RS04015: HSERO_RS04015 - flagellar biosynthesis/type III secretory pathway protein, at 879,088 to 879,624
_RS04015
HSERO_RS04020: HSERO_RS04020 - hypothetical protein, at 879,871 to 880,104
_RS04020
HSERO_RS04025: HSERO_RS04025 - hypothetical protein, at 880,109 to 880,522
_RS04025
HSERO_RS04030: HSERO_RS04030 - type II/III HrcC transmembrane protein, at 880,519 to 882,600
_RS04030
Position (kb) 880
881 Strain fitness (log2 ratio) -1
0
1 at 879.251 kb on + strand, within HSERO_RS04015 at 879.453 kb on + strand, within HSERO_RS04015 at 879.557 kb on + strand, within HSERO_RS04015 at 879.595 kb on + strand at 879.867 kb on + strand at 880.082 kb on - strand at 880.324 kb on + strand, within HSERO_RS04025 at 880.404 kb on + strand, within HSERO_RS04025 at 880.507 kb on - strand at 880.599 kb on - strand at 880.660 kb on - strand at 880.699 kb on - strand at 880.711 kb on - strand at 880.746 kb on + strand, within HSERO_RS04030 at 881.124 kb on + strand, within HSERO_RS04030 at 881.132 kb on - strand, within HSERO_RS04030 at 881.169 kb on - strand, within HSERO_RS04030 at 881.294 kb on - strand, within HSERO_RS04030 at 881.383 kb on + strand, within HSERO_RS04030 at 881.412 kb on - strand, within HSERO_RS04030 at 881.492 kb on + strand, within HSERO_RS04030 at 881.495 kb on - strand, within HSERO_RS04030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 879,251 + HSERO_RS04015 0.30 -0.2 879,453 + HSERO_RS04015 0.68 -0.7 879,557 + HSERO_RS04015 0.87 +0.3 879,595 + +0.1 879,867 + -0.0 880,082 - +0.3 880,324 + HSERO_RS04025 0.52 +0.6 880,404 + HSERO_RS04025 0.71 +0.5 880,507 - +0.2 880,599 - -1.1 880,660 - +0.9 880,699 - -0.7 880,711 - +0.2 880,746 + HSERO_RS04030 0.11 +0.4 881,124 + HSERO_RS04030 0.29 +0.4 881,132 - HSERO_RS04030 0.29 -0.3 881,169 - HSERO_RS04030 0.31 -0.4 881,294 - HSERO_RS04030 0.37 +0.5 881,383 + HSERO_RS04030 0.41 +1.3 881,412 - HSERO_RS04030 0.43 -0.9 881,492 + HSERO_RS04030 0.47 -0.4 881,495 - HSERO_RS04030 0.47 -0.2
Or see this region's nucleotide sequence