Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03115 and HSERO_RS03120 are separated by 50 nucleotides HSERO_RS03120 and HSERO_RS03125 are separated by 5 nucleotides HSERO_RS03125 and HSERO_RS03130 overlap by 4 nucleotides
HSERO_RS03115: HSERO_RS03115 - methyl-accepting chemotaxis protein, at 681,819 to 683,606
_RS03115
HSERO_RS03120: HSERO_RS03120 - chemotaxis protein CheW, at 683,657 to 684,241
_RS03120
HSERO_RS03125: HSERO_RS03125 - SAM-dependent methyltransferase, at 684,247 to 685,080
_RS03125
HSERO_RS03130: HSERO_RS03130 - chemotaxis protein CheY, at 685,077 to 686,222
_RS03130
Position (kb) 683
684
685 Strain fitness (log2 ratio) -1
0
1 at 682.679 kb on + strand, within HSERO_RS03115 at 683.187 kb on + strand, within HSERO_RS03115 at 683.218 kb on + strand, within HSERO_RS03115 at 683.427 kb on - strand, within HSERO_RS03115 at 683.559 kb on + strand at 683.600 kb on + strand at 683.600 kb on + strand at 683.600 kb on + strand at 683.737 kb on - strand, within HSERO_RS03120 at 683.817 kb on - strand, within HSERO_RS03120 at 684.116 kb on + strand, within HSERO_RS03120 at 684.335 kb on - strand, within HSERO_RS03125 at 684.435 kb on + strand, within HSERO_RS03125 at 684.616 kb on + strand, within HSERO_RS03125 at 684.625 kb on - strand, within HSERO_RS03125 at 684.721 kb on + strand, within HSERO_RS03125 at 684.733 kb on - strand, within HSERO_RS03125 at 684.751 kb on - strand at 684.904 kb on + strand, within HSERO_RS03125 at 685.033 kb on - strand at 685.120 kb on + strand at 685.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 682,679 + HSERO_RS03115 0.48 -0.5 683,187 + HSERO_RS03115 0.77 -0.3 683,218 + HSERO_RS03115 0.78 +1.0 683,427 - HSERO_RS03115 0.90 -0.1 683,559 + +0.2 683,600 + +0.2 683,600 + +0.4 683,600 + +0.4 683,737 - HSERO_RS03120 0.14 +0.6 683,817 - HSERO_RS03120 0.27 +0.1 684,116 + HSERO_RS03120 0.78 +0.5 684,335 - HSERO_RS03125 0.11 -0.2 684,435 + HSERO_RS03125 0.23 +0.0 684,616 + HSERO_RS03125 0.44 -1.4 684,625 - HSERO_RS03125 0.45 +0.3 684,721 + HSERO_RS03125 0.57 +0.4 684,733 - HSERO_RS03125 0.58 -0.1 684,751 - +0.5 684,904 + HSERO_RS03125 0.79 +0.4 685,033 - +0.5 685,120 + +0.1 685,164 + -0.7
Or see this region's nucleotide sequence