Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03100 and HSERO_RS03105 are separated by 117 nucleotides HSERO_RS03105 and HSERO_RS03110 overlap by 4 nucleotides HSERO_RS03110 and HSERO_RS03115 are separated by 31 nucleotides
HSERO_RS03100: HSERO_RS03100 - chemotaxis protein CheY, at 678,819 to 679,187
_RS03100
HSERO_RS03105: HSERO_RS03105 - anti-sigma factor antagonist, at 679,305 to 679,613
_RS03105
HSERO_RS03110: HSERO_RS03110 - chemotaxis protein CheA, at 679,610 to 681,787
_RS03110
HSERO_RS03115: HSERO_RS03115 - methyl-accepting chemotaxis protein, at 681,819 to 683,606
_RS03115
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -1
0
1 at 678.650 kb on + strand at 678.929 kb on + strand, within HSERO_RS03100 at 678.938 kb on - strand, within HSERO_RS03100 at 678.999 kb on + strand, within HSERO_RS03100 at 678.999 kb on + strand, within HSERO_RS03100 at 679.105 kb on - strand, within HSERO_RS03100 at 679.125 kb on + strand, within HSERO_RS03100 at 679.133 kb on - strand, within HSERO_RS03100 at 679.209 kb on - strand at 679.212 kb on + strand at 679.215 kb on - strand at 679.235 kb on - strand at 679.240 kb on + strand at 679.243 kb on - strand at 679.243 kb on - strand at 679.258 kb on + strand at 679.263 kb on + strand at 679.268 kb on + strand at 679.271 kb on - strand at 679.398 kb on - strand, within HSERO_RS03105 at 679.398 kb on - strand, within HSERO_RS03105 at 679.448 kb on - strand, within HSERO_RS03105 at 679.462 kb on - strand, within HSERO_RS03105 at 679.564 kb on + strand, within HSERO_RS03105 at 679.692 kb on - strand at 679.832 kb on + strand, within HSERO_RS03110 at 679.850 kb on - strand, within HSERO_RS03110 at 680.020 kb on + strand, within HSERO_RS03110 at 680.024 kb on + strand, within HSERO_RS03110 at 680.296 kb on + strand, within HSERO_RS03110 at 680.391 kb on - strand, within HSERO_RS03110 at 680.631 kb on - strand, within HSERO_RS03110 at 680.896 kb on + strand, within HSERO_RS03110 at 681.012 kb on - strand, within HSERO_RS03110 at 681.106 kb on - strand, within HSERO_RS03110 at 681.380 kb on - strand, within HSERO_RS03110 at 681.400 kb on - strand, within HSERO_RS03110 at 681.452 kb on - strand, within HSERO_RS03110 at 681.734 kb on + strand at 681.742 kb on - strand at 681.809 kb on - strand at 681.981 kb on + strand at 681.988 kb on + strand at 681.994 kb on - strand at 682.258 kb on + strand, within HSERO_RS03115 at 682.338 kb on + strand, within HSERO_RS03115 at 682.338 kb on + strand, within HSERO_RS03115 at 682.424 kb on + strand, within HSERO_RS03115 at 682.430 kb on - strand, within HSERO_RS03115 at 682.531 kb on - strand, within HSERO_RS03115 at 682.679 kb on + strand, within HSERO_RS03115
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 678,650 + -0.6 678,929 + HSERO_RS03100 0.30 -0.4 678,938 - HSERO_RS03100 0.32 +0.4 678,999 + HSERO_RS03100 0.49 -0.3 678,999 + HSERO_RS03100 0.49 -0.3 679,105 - HSERO_RS03100 0.78 +0.0 679,125 + HSERO_RS03100 0.83 +0.0 679,133 - HSERO_RS03100 0.85 +0.0 679,209 - -0.6 679,212 + -0.0 679,215 - +0.7 679,235 - +0.1 679,240 + -0.6 679,243 - +0.1 679,243 - +0.3 679,258 + -0.1 679,263 + -1.1 679,268 + -0.3 679,271 - +0.2 679,398 - HSERO_RS03105 0.30 +0.7 679,398 - HSERO_RS03105 0.30 +1.3 679,448 - HSERO_RS03105 0.46 +0.5 679,462 - HSERO_RS03105 0.51 +0.4 679,564 + HSERO_RS03105 0.84 +1.0 679,692 - +0.8 679,832 + HSERO_RS03110 0.10 +0.5 679,850 - HSERO_RS03110 0.11 -0.0 680,020 + HSERO_RS03110 0.19 +0.4 680,024 + HSERO_RS03110 0.19 -0.4 680,296 + HSERO_RS03110 0.31 +0.2 680,391 - HSERO_RS03110 0.36 +0.1 680,631 - HSERO_RS03110 0.47 +0.7 680,896 + HSERO_RS03110 0.59 +0.1 681,012 - HSERO_RS03110 0.64 +0.5 681,106 - HSERO_RS03110 0.69 +1.1 681,380 - HSERO_RS03110 0.81 -0.2 681,400 - HSERO_RS03110 0.82 +0.3 681,452 - HSERO_RS03110 0.85 +0.8 681,734 + -0.4 681,742 - +0.6 681,809 - +0.2 681,981 + +0.0 681,988 + +0.1 681,994 - +0.2 682,258 + HSERO_RS03115 0.25 +0.0 682,338 + HSERO_RS03115 0.29 -0.1 682,338 + HSERO_RS03115 0.29 -0.2 682,424 + HSERO_RS03115 0.34 +0.2 682,430 - HSERO_RS03115 0.34 +0.6 682,531 - HSERO_RS03115 0.40 +1.2 682,679 + HSERO_RS03115 0.48 -0.5
Or see this region's nucleotide sequence