Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02895 and HSERO_RS02900 are separated by 935 nucleotides HSERO_RS02900 and HSERO_RS02905 are separated by 356 nucleotides
HSERO_RS02895: HSERO_RS02895 - hypothetical protein, at 634,696 to 635,559
_RS02895
HSERO_RS02900: HSERO_RS02900 - ammonium transporter, at 636,495 to 637,697
_RS02900
HSERO_RS02905: HSERO_RS02905 - alkaline phosphatase, at 638,054 to 639,682
_RS02905
Position (kb) 636
637
638 Strain fitness (log2 ratio) -1
0
1
2 at 635.500 kb on + strand at 635.505 kb on + strand at 635.510 kb on + strand at 635.523 kb on - strand at 635.561 kb on - strand at 635.594 kb on + strand at 635.640 kb on + strand at 635.640 kb on + strand at 635.648 kb on - strand at 635.653 kb on - strand at 635.712 kb on - strand at 635.720 kb on + strand at 635.752 kb on + strand at 635.760 kb on - strand at 635.775 kb on + strand at 635.803 kb on + strand at 635.805 kb on + strand at 635.805 kb on + strand at 635.813 kb on - strand at 635.813 kb on - strand at 635.813 kb on - strand at 635.813 kb on - strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.815 kb on + strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.823 kb on - strand at 635.861 kb on + strand at 635.861 kb on + strand at 635.866 kb on + strand at 635.873 kb on + strand at 635.874 kb on - strand at 635.874 kb on - strand at 635.874 kb on - strand at 635.881 kb on - strand at 635.883 kb on - strand at 635.932 kb on - strand at 635.954 kb on + strand at 635.985 kb on - strand at 635.985 kb on - strand at 635.989 kb on + strand at 635.989 kb on + strand at 635.989 kb on + strand at 636.003 kb on + strand at 636.003 kb on + strand at 636.011 kb on - strand at 636.014 kb on + strand at 636.019 kb on + strand at 636.034 kb on - strand at 636.039 kb on - strand at 636.039 kb on - strand at 636.076 kb on + strand at 636.076 kb on - strand at 636.076 kb on - strand at 636.078 kb on - strand at 636.091 kb on + strand at 636.101 kb on + strand at 636.109 kb on - strand at 636.119 kb on + strand at 636.154 kb on - strand at 636.220 kb on - strand at 636.260 kb on - strand at 636.265 kb on - strand at 636.272 kb on + strand at 636.272 kb on + strand at 636.306 kb on + strand at 636.358 kb on - strand at 636.363 kb on - strand at 636.403 kb on - strand at 636.420 kb on - strand at 636.420 kb on - strand at 636.420 kb on - strand at 636.451 kb on + strand at 636.451 kb on + strand at 636.569 kb on - strand at 636.592 kb on + strand at 636.614 kb on - strand at 636.624 kb on + strand, within HSERO_RS02900 at 636.854 kb on + strand, within HSERO_RS02900 at 636.912 kb on - strand, within HSERO_RS02900 at 637.061 kb on + strand, within HSERO_RS02900 at 637.274 kb on - strand, within HSERO_RS02900 at 637.312 kb on + strand, within HSERO_RS02900 at 637.320 kb on - strand, within HSERO_RS02900 at 637.337 kb on - strand, within HSERO_RS02900 at 637.424 kb on - strand, within HSERO_RS02900 at 637.434 kb on - strand, within HSERO_RS02900 at 637.450 kb on - strand, within HSERO_RS02900 at 637.533 kb on + strand, within HSERO_RS02900 at 637.777 kb on - strand at 637.844 kb on - strand at 637.866 kb on + strand at 637.900 kb on + strand at 637.914 kb on + strand at 637.964 kb on + strand at 637.964 kb on + strand at 637.964 kb on + strand at 637.972 kb on - strand at 637.972 kb on - strand at 637.972 kb on - strand at 637.972 kb on - strand at 638.139 kb on + strand at 638.439 kb on + strand, within HSERO_RS02905 at 638.447 kb on - strand, within HSERO_RS02905 at 638.566 kb on - strand, within HSERO_RS02905 at 638.592 kb on - strand, within HSERO_RS02905 at 638.600 kb on - strand, within HSERO_RS02905 at 638.656 kb on + strand, within HSERO_RS02905 at 638.659 kb on - strand, within HSERO_RS02905 at 638.688 kb on - strand, within HSERO_RS02905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 635,500 + -0.1 635,505 + -0.3 635,510 + -0.3 635,523 - +0.1 635,561 - -0.1 635,594 + +0.1 635,640 + -0.4 635,640 + -0.1 635,648 - -0.1 635,653 - -0.7 635,712 - +1.0 635,720 + +0.6 635,752 + +0.1 635,760 - -0.1 635,775 + +0.2 635,803 + +0.1 635,805 + +0.9 635,805 + -0.1 635,813 - -0.5 635,813 - -0.5 635,813 - -1.1 635,813 - +0.0 635,815 + -1.2 635,815 + -0.7 635,815 + -0.4 635,815 + -0.3 635,815 + -0.1 635,815 + -0.5 635,815 + -0.0 635,815 + +0.3 635,815 + +1.3 635,815 + +0.1 635,823 - -0.1 635,823 - +0.1 635,823 - -0.5 635,823 - +0.0 635,823 - -0.4 635,823 - -0.9 635,823 - -0.3 635,861 + +0.2 635,861 + -0.2 635,866 + +1.2 635,873 + +0.7 635,874 - -1.0 635,874 - -0.7 635,874 - +0.0 635,881 - +0.1 635,883 - -0.2 635,932 - -0.5 635,954 + -0.2 635,985 - +0.1 635,985 - +0.1 635,989 + +0.0 635,989 + -0.0 635,989 + -0.2 636,003 + +0.0 636,003 + -0.5 636,011 - -0.4 636,014 + +0.5 636,019 + +0.6 636,034 - +0.3 636,039 - -0.7 636,039 - +0.3 636,076 + -0.0 636,076 - +0.6 636,076 - -0.4 636,078 - -0.2 636,091 + -0.2 636,101 + -1.4 636,109 - -0.1 636,119 + +2.5 636,154 - +0.4 636,220 - -0.3 636,260 - +0.0 636,265 - -0.4 636,272 + -0.1 636,272 + -0.2 636,306 + +0.0 636,358 - +0.3 636,363 - +0.4 636,403 - -0.3 636,420 - +0.1 636,420 - +0.2 636,420 - -0.0 636,451 + -0.7 636,451 + +0.2 636,569 - +0.4 636,592 + +0.6 636,614 - -0.1 636,624 + HSERO_RS02900 0.11 +1.7 636,854 + HSERO_RS02900 0.30 +0.4 636,912 - HSERO_RS02900 0.35 +0.6 637,061 + HSERO_RS02900 0.47 +0.6 637,274 - HSERO_RS02900 0.65 -0.0 637,312 + HSERO_RS02900 0.68 +0.2 637,320 - HSERO_RS02900 0.69 -0.5 637,337 - HSERO_RS02900 0.70 +0.3 637,424 - HSERO_RS02900 0.77 +0.2 637,434 - HSERO_RS02900 0.78 +0.6 637,450 - HSERO_RS02900 0.79 +0.5 637,533 + HSERO_RS02900 0.86 +0.0 637,777 - +0.8 637,844 - +0.1 637,866 + -0.3 637,900 + -1.7 637,914 + +0.2 637,964 + -0.4 637,964 + -0.7 637,964 + -0.4 637,972 - +0.3 637,972 - -0.5 637,972 - +0.0 637,972 - -0.1 638,139 + -0.3 638,439 + HSERO_RS02905 0.24 +0.5 638,447 - HSERO_RS02905 0.24 +0.6 638,566 - HSERO_RS02905 0.31 +0.0 638,592 - HSERO_RS02905 0.33 -0.3 638,600 - HSERO_RS02905 0.34 -0.0 638,656 + HSERO_RS02905 0.37 +0.4 638,659 - HSERO_RS02905 0.37 -0.2 638,688 - HSERO_RS02905 0.39 -0.1
Or see this region's nucleotide sequence