Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02860

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02855 and HSERO_RS02860 are separated by 83 nucleotidesHSERO_RS02860 and HSERO_RS02865 are separated by 167 nucleotides HSERO_RS02855: HSERO_RS02855 - D-aminoacylase, at 627,133 to 628,629 _RS02855 HSERO_RS02860: HSERO_RS02860 - MFS transporter, at 628,713 to 629,906 _RS02860 HSERO_RS02865: HSERO_RS02865 - transcription regulator protein, at 630,074 to 630,961 _RS02865 Position (kb) 628 629 630Strain fitness (log2 ratio) -2 -1 0 1at 628.054 kb on - strand, within HSERO_RS02855at 628.126 kb on + strand, within HSERO_RS02855at 628.134 kb on - strand, within HSERO_RS02855at 628.246 kb on + strand, within HSERO_RS02855at 628.473 kb on + strand, within HSERO_RS02855at 628.661 kb on + strandat 628.977 kb on - strand, within HSERO_RS02860at 629.280 kb on - strand, within HSERO_RS02860at 629.322 kb on - strand, within HSERO_RS02860at 629.372 kb on + strand, within HSERO_RS02860at 629.380 kb on - strand, within HSERO_RS02860at 629.427 kb on - strand, within HSERO_RS02860at 629.835 kb on + strandat 629.838 kb on - strandat 629.977 kb on + strandat 629.987 kb on - strandat 630.032 kb on + strandat 630.039 kb on + strandat 630.069 kb on - strandat 630.569 kb on - strand, within HSERO_RS02865at 630.584 kb on + strand, within HSERO_RS02865at 630.711 kb on + strandat 630.745 kb on + strand, within HSERO_RS02865at 630.747 kb on + strand, within HSERO_RS02865at 630.753 kb on - strand, within HSERO_RS02865at 630.805 kb on + strand, within HSERO_RS02865at 630.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days
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628,054 - HSERO_RS02855 0.62 -0.7
628,126 + HSERO_RS02855 0.66 -2.1
628,134 - HSERO_RS02855 0.67 +0.8
628,246 + HSERO_RS02855 0.74 +0.1
628,473 + HSERO_RS02855 0.90 -0.1
628,661 + +0.9
628,977 - HSERO_RS02860 0.22 +0.2
629,280 - HSERO_RS02860 0.47 +0.2
629,322 - HSERO_RS02860 0.51 -0.1
629,372 + HSERO_RS02860 0.55 +1.1
629,380 - HSERO_RS02860 0.56 +0.2
629,427 - HSERO_RS02860 0.60 +0.6
629,835 + -1.7
629,838 - -0.2
629,977 + +0.1
629,987 - +0.2
630,032 + -0.6
630,039 + +0.6
630,069 - +0.1
630,569 - HSERO_RS02865 0.56 -0.2
630,584 + HSERO_RS02865 0.57 +0.4
630,711 + -1.2
630,745 + HSERO_RS02865 0.76 +0.1
630,747 + HSERO_RS02865 0.76 -0.2
630,753 - HSERO_RS02865 0.76 -0.3
630,805 + HSERO_RS02865 0.82 -0.0
630,885 - +0.4

Or see this region's nucleotide sequence