Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02570 and HSERO_RS02575 are separated by 178 nucleotides HSERO_RS02575 and HSERO_RS02580 are separated by 118 nucleotides HSERO_RS02580 and HSERO_RS02585 are separated by 132 nucleotides
HSERO_RS02570: HSERO_RS02570 - methyltransferase, at 564,277 to 565,854
_RS02570
HSERO_RS02575: HSERO_RS02575 - diguanylate cyclase, at 566,033 to 566,866
_RS02575
HSERO_RS02580: HSERO_RS02580 - hypothetical protein, at 566,985 to 567,494
_RS02580
HSERO_RS02585: HSERO_RS02585 - hypothetical protein, at 567,627 to 568,031
_RS02585
Position (kb) 566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 565.075 kb on - strand, within HSERO_RS02570 at 565.129 kb on - strand, within HSERO_RS02570 at 565.366 kb on + strand, within HSERO_RS02570 at 565.548 kb on + strand, within HSERO_RS02570 at 565.591 kb on + strand, within HSERO_RS02570 at 565.673 kb on + strand, within HSERO_RS02570 at 565.681 kb on - strand, within HSERO_RS02570 at 565.838 kb on - strand at 565.902 kb on + strand at 566.060 kb on + strand at 566.068 kb on - strand at 566.248 kb on - strand, within HSERO_RS02575 at 566.279 kb on - strand, within HSERO_RS02575 at 566.331 kb on + strand, within HSERO_RS02575 at 566.515 kb on - strand, within HSERO_RS02575 at 566.690 kb on - strand, within HSERO_RS02575 at 566.690 kb on - strand, within HSERO_RS02575 at 566.863 kb on - strand at 566.869 kb on + strand at 566.877 kb on - strand at 566.891 kb on + strand at 567.020 kb on + strand at 567.134 kb on - strand, within HSERO_RS02580 at 567.135 kb on - strand, within HSERO_RS02580 at 567.142 kb on + strand, within HSERO_RS02580 at 567.316 kb on - strand, within HSERO_RS02580 at 567.366 kb on + strand, within HSERO_RS02580 at 567.527 kb on + strand at 567.559 kb on + strand at 567.701 kb on + strand, within HSERO_RS02585 at 567.788 kb on + strand, within HSERO_RS02585 at 567.796 kb on - strand, within HSERO_RS02585 at 567.853 kb on + strand, within HSERO_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 565,075 - HSERO_RS02570 0.51 +0.0 565,129 - HSERO_RS02570 0.54 +0.1 565,366 + HSERO_RS02570 0.69 +0.0 565,548 + HSERO_RS02570 0.81 +0.2 565,591 + HSERO_RS02570 0.83 +0.4 565,673 + HSERO_RS02570 0.88 +0.2 565,681 - HSERO_RS02570 0.89 -0.6 565,838 - -0.5 565,902 + +0.4 566,060 + +0.0 566,068 - -0.1 566,248 - HSERO_RS02575 0.26 +0.3 566,279 - HSERO_RS02575 0.29 +0.4 566,331 + HSERO_RS02575 0.36 +0.9 566,515 - HSERO_RS02575 0.58 -1.1 566,690 - HSERO_RS02575 0.79 +0.3 566,690 - HSERO_RS02575 0.79 +0.5 566,863 - +0.7 566,869 + -3.4 566,877 - +0.9 566,891 + +0.3 567,020 + +0.1 567,134 - HSERO_RS02580 0.29 -0.1 567,135 - HSERO_RS02580 0.29 +0.1 567,142 + HSERO_RS02580 0.31 +0.1 567,316 - HSERO_RS02580 0.65 -0.4 567,366 + HSERO_RS02580 0.75 +0.3 567,527 + +0.6 567,559 + +0.4 567,701 + HSERO_RS02585 0.18 -0.0 567,788 + HSERO_RS02585 0.40 +1.0 567,796 - HSERO_RS02585 0.42 -0.6 567,853 + HSERO_RS02585 0.56 -0.2
Or see this region's nucleotide sequence