Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01425

Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS01420 and HSERO_RS01425 are separated by 77 nucleotidesHSERO_RS01425 and HSERO_RS01430 are separated by 109 nucleotides HSERO_RS01420: HSERO_RS01420 - serine/threonine dehydratase, at 306,899 to 307,879 _RS01420 HSERO_RS01425: HSERO_RS01425 - DNA-binding protein, at 307,957 to 308,613 _RS01425 HSERO_RS01430: HSERO_RS01430 - phospholipase, at 308,723 to 309,973 _RS01430 Position (kb) 307 308 309Strain fitness (log2 ratio) -1 0 1at 307.093 kb on + strand, within HSERO_RS01420at 307.093 kb on + strand, within HSERO_RS01420at 307.193 kb on + strand, within HSERO_RS01420at 307.316 kb on + strand, within HSERO_RS01420at 307.559 kb on - strand, within HSERO_RS01420at 307.895 kb on - strandat 307.994 kb on + strandat 308.009 kb on + strandat 308.151 kb on - strand, within HSERO_RS01425at 308.214 kb on + strand, within HSERO_RS01425at 308.408 kb on + strand, within HSERO_RS01425at 308.449 kb on - strand, within HSERO_RS01425at 308.728 kb on - strandat 308.771 kb on - strandat 308.860 kb on + strand, within HSERO_RS01430at 308.943 kb on + strand, within HSERO_RS01430at 309.039 kb on - strand, within HSERO_RS01430at 309.169 kb on + strand, within HSERO_RS01430at 309.169 kb on + strand, within HSERO_RS01430at 309.282 kb on - strand, within HSERO_RS01430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days
remove
307,093 + HSERO_RS01420 0.20 +0.1
307,093 + HSERO_RS01420 0.20 +0.0
307,193 + HSERO_RS01420 0.30 -0.1
307,316 + HSERO_RS01420 0.43 +0.4
307,559 - HSERO_RS01420 0.67 -0.4
307,895 - +0.8
307,994 + -0.1
308,009 + +0.1
308,151 - HSERO_RS01425 0.30 +0.5
308,214 + HSERO_RS01425 0.39 +0.5
308,408 + HSERO_RS01425 0.69 +0.5
308,449 - HSERO_RS01425 0.75 -0.2
308,728 - -1.1
308,771 - -1.1
308,860 + HSERO_RS01430 0.11 +0.0
308,943 + HSERO_RS01430 0.18 -0.3
309,039 - HSERO_RS01430 0.25 +0.4
309,169 + HSERO_RS01430 0.36 -0.9
309,169 + HSERO_RS01430 0.36 +0.0
309,282 - HSERO_RS01430 0.45 +0.1

Or see this region's nucleotide sequence