Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01155 and HSERO_RS01160 are separated by 118 nucleotides HSERO_RS01160 and HSERO_RS01165 are separated by 50 nucleotides HSERO_RS01165 and HSERO_RS01170 are separated by 54 nucleotides
HSERO_RS01155: HSERO_RS01155 - peptidase M38, at 239,705 to 240,934
_RS01155
HSERO_RS01160: HSERO_RS01160 - LysR family transcriptional regulator, at 241,053 to 241,958
_RS01160
HSERO_RS01165: HSERO_RS01165 - dihydroneopterin triphosphate pyrophosphatase, at 242,009 to 242,512
_RS01165
HSERO_RS01170: HSERO_RS01170 - metal-dependent hydrolase, at 242,567 to 243,364
_RS01170
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 240.077 kb on - strand, within HSERO_RS01155 at 240.149 kb on + strand, within HSERO_RS01155 at 240.247 kb on - strand, within HSERO_RS01155 at 240.391 kb on + strand, within HSERO_RS01155 at 240.391 kb on + strand, within HSERO_RS01155 at 240.455 kb on + strand at 240.562 kb on - strand, within HSERO_RS01155 at 240.625 kb on + strand, within HSERO_RS01155 at 240.741 kb on + strand, within HSERO_RS01155 at 241.093 kb on + strand at 241.347 kb on - strand, within HSERO_RS01160 at 241.368 kb on + strand, within HSERO_RS01160 at 241.592 kb on + strand, within HSERO_RS01160 at 241.758 kb on + strand, within HSERO_RS01160 at 241.781 kb on - strand, within HSERO_RS01160 at 241.945 kb on - strand at 242.026 kb on - strand at 242.117 kb on - strand, within HSERO_RS01165 at 242.142 kb on + strand, within HSERO_RS01165 at 242.145 kb on - strand, within HSERO_RS01165 at 242.216 kb on + strand, within HSERO_RS01165 at 242.216 kb on + strand, within HSERO_RS01165 at 242.247 kb on - strand, within HSERO_RS01165 at 242.346 kb on - strand, within HSERO_RS01165 at 242.534 kb on + strand at 242.611 kb on - strand at 242.611 kb on - strand at 242.693 kb on + strand, within HSERO_RS01170 at 242.701 kb on - strand, within HSERO_RS01170 at 242.729 kb on + strand, within HSERO_RS01170 at 242.937 kb on + strand, within HSERO_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 240,077 - HSERO_RS01155 0.30 -0.0 240,149 + HSERO_RS01155 0.36 -0.6 240,247 - HSERO_RS01155 0.44 +0.4 240,391 + HSERO_RS01155 0.56 -0.1 240,391 + HSERO_RS01155 0.56 -0.2 240,455 + +1.8 240,562 - HSERO_RS01155 0.70 -0.2 240,625 + HSERO_RS01155 0.75 +0.5 240,741 + HSERO_RS01155 0.84 +0.4 241,093 + +0.4 241,347 - HSERO_RS01160 0.32 -3.3 241,368 + HSERO_RS01160 0.35 +0.5 241,592 + HSERO_RS01160 0.59 +0.3 241,758 + HSERO_RS01160 0.78 +1.0 241,781 - HSERO_RS01160 0.80 +1.0 241,945 - -0.3 242,026 - +0.1 242,117 - HSERO_RS01165 0.21 -0.6 242,142 + HSERO_RS01165 0.26 +0.1 242,145 - HSERO_RS01165 0.27 -0.4 242,216 + HSERO_RS01165 0.41 -0.8 242,216 + HSERO_RS01165 0.41 -0.5 242,247 - HSERO_RS01165 0.47 -0.2 242,346 - HSERO_RS01165 0.67 -0.7 242,534 + +0.6 242,611 - +0.3 242,611 - +0.1 242,693 + HSERO_RS01170 0.16 +0.2 242,701 - HSERO_RS01170 0.17 -1.1 242,729 + HSERO_RS01170 0.20 +0.2 242,937 + HSERO_RS01170 0.46 -0.1
Or see this region's nucleotide sequence