Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 8 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00870 and HSERO_RS00875 are separated by 228 nucleotides HSERO_RS00875 and HSERO_RS00880 are separated by 15 nucleotides
HSERO_RS00870: HSERO_RS00870 - L-proline ABC transporter, substrate-binding component <small>(from data)</small>, at 180,571 to 181,707
_RS00870
HSERO_RS00875: HSERO_RS00875 - hypothetical protein, at 181,936 to 182,946
_RS00875
HSERO_RS00880: HSERO_RS00880 - ornithine cyclodeaminase, at 182,962 to 183,900
_RS00880
Position (kb) 181
182
183 Strain fitness (log2 ratio) -1
0
1 at 181.089 kb on - strand, within HSERO_RS00870 at 181.146 kb on + strand, within HSERO_RS00870 at 181.172 kb on - strand, within HSERO_RS00870 at 181.185 kb on + strand, within HSERO_RS00870 at 181.267 kb on + strand, within HSERO_RS00870 at 181.275 kb on - strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.465 kb on + strand, within HSERO_RS00870 at 181.589 kb on - strand, within HSERO_RS00870 at 181.763 kb on + strand at 181.763 kb on + strand at 181.824 kb on + strand at 181.906 kb on + strand at 181.914 kb on - strand at 181.972 kb on - strand at 182.195 kb on - strand, within HSERO_RS00875 at 182.253 kb on + strand, within HSERO_RS00875 at 182.276 kb on - strand, within HSERO_RS00875 at 182.299 kb on - strand, within HSERO_RS00875 at 182.321 kb on + strand, within HSERO_RS00875 at 182.531 kb on - strand, within HSERO_RS00875 at 182.558 kb on + strand, within HSERO_RS00875 at 182.625 kb on - strand, within HSERO_RS00875 at 182.653 kb on - strand, within HSERO_RS00875 at 182.655 kb on + strand, within HSERO_RS00875 at 182.728 kb on + strand, within HSERO_RS00875 at 182.819 kb on + strand, within HSERO_RS00875 at 182.846 kb on - strand at 182.846 kb on - strand at 182.893 kb on - strand at 183.089 kb on - strand, within HSERO_RS00880 at 183.163 kb on + strand, within HSERO_RS00880 at 183.199 kb on + strand, within HSERO_RS00880 at 183.398 kb on + strand, within HSERO_RS00880 at 183.414 kb on + strand, within HSERO_RS00880 at 183.553 kb on + strand, within HSERO_RS00880 at 183.734 kb on - strand, within HSERO_RS00880 at 183.736 kb on + strand, within HSERO_RS00880 at 183.736 kb on + strand, within HSERO_RS00880 at 183.802 kb on - strand, within HSERO_RS00880 at 183.836 kb on - strand at 183.836 kb on - strand at 183.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 8 days remove 181,089 - HSERO_RS00870 0.46 -0.0 181,146 + HSERO_RS00870 0.51 +0.3 181,172 - HSERO_RS00870 0.53 -0.3 181,185 + HSERO_RS00870 0.54 +0.1 181,267 + HSERO_RS00870 0.61 -0.3 181,275 - HSERO_RS00870 0.62 -0.1 181,465 + HSERO_RS00870 0.79 -1.3 181,465 + HSERO_RS00870 0.79 +0.3 181,589 - HSERO_RS00870 0.90 +0.0 181,763 + -0.1 181,763 + +0.0 181,824 + +0.1 181,906 + -0.1 181,914 - -0.1 181,972 - -0.0 182,195 - HSERO_RS00875 0.26 -0.4 182,253 + HSERO_RS00875 0.31 -0.1 182,276 - HSERO_RS00875 0.34 -0.8 182,299 - HSERO_RS00875 0.36 +0.5 182,321 + HSERO_RS00875 0.38 -0.5 182,531 - HSERO_RS00875 0.59 -0.8 182,558 + HSERO_RS00875 0.62 -0.2 182,625 - HSERO_RS00875 0.68 -0.1 182,653 - HSERO_RS00875 0.71 -0.5 182,655 + HSERO_RS00875 0.71 +0.3 182,728 + HSERO_RS00875 0.78 -0.1 182,819 + HSERO_RS00875 0.87 +0.3 182,846 - -0.4 182,846 - +0.4 182,893 - +0.5 183,089 - HSERO_RS00880 0.14 -0.1 183,163 + HSERO_RS00880 0.21 +0.6 183,199 + HSERO_RS00880 0.25 +0.1 183,398 + HSERO_RS00880 0.46 -0.1 183,414 + HSERO_RS00880 0.48 -0.8 183,553 + HSERO_RS00880 0.63 -0.2 183,734 - HSERO_RS00880 0.82 +0.2 183,736 + HSERO_RS00880 0.82 -0.0 183,736 + HSERO_RS00880 0.82 +0.3 183,802 - HSERO_RS00880 0.89 -0.1 183,836 - -0.5 183,836 - +0.2 183,836 - +0.9
Or see this region's nucleotide sequence