Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01080

Experiment: PYE 0.5x 25C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 25C survival rep1 28 days
1,183,257	+				+0.1
1,183,257	+				-0.2
1,183,263	+				-1.0
1,183,285	-				+2.4
1,183,344	-		CCNA_01078	0.14	+1.0
1,183,354	-		CCNA_01078	0.15	-2.0
1,183,414	+		CCNA_01078	0.23	+1.1
1,183,423	-		CCNA_01078	0.24	+2.4
1,183,423	-		CCNA_01078	0.24	+0.9
1,183,423	-		CCNA_01078	0.24	-0.4
1,183,423	-		CCNA_01078	0.24	+1.1
1,183,441	+		CCNA_01078	0.27	-0.4
1,183,494	+		CCNA_01078	0.34	+0.2
1,183,505	+		CCNA_01078	0.35	-1.3
1,183,505	+		CCNA_01078	0.35	+1.9
1,183,513	-		CCNA_01078	0.36	-0.6
1,183,513	-		CCNA_01078	0.36	-2.1
1,183,538	-		CCNA_01078	0.40	+2.0
1,183,586	+		CCNA_01078	0.46	+2.4
1,183,592	+		CCNA_01078	0.47	-1.3
1,183,592	+		CCNA_01078	0.47	-2.1
1,183,600	-		CCNA_01078	0.48	-2.2
1,183,600	-		CCNA_01078	0.48	+1.8
1,183,621	+		CCNA_01078	0.51	+0.1
1,183,621	+		CCNA_01078	0.51	-0.7
1,183,621	+		CCNA_01078	0.51	+2.4
1,183,621	+		CCNA_01078	0.51	+0.1
1,183,629	-		CCNA_01078	0.52	-0.6
1,183,629	-		CCNA_01078	0.52	+0.1
1,183,629	-		CCNA_01078	0.52	-0.5
1,183,629	-		CCNA_01078	0.52	-1.8
1,183,667	-		CCNA_01078	0.57	+0.3
1,183,675	+		CCNA_01078	0.58	-1.3
1,183,682	+		CCNA_01078	0.59	+0.9
1,183,690	-		CCNA_01078	0.60	+0.9
1,183,715	+		CCNA_01078	0.63	+3.0
1,183,723	-		CCNA_01078	0.64	+0.6
1,183,749	+		CCNA_01078	0.68	-3.2
1,183,761	-		CCNA_01078	0.69	+0.4
1,183,844	+		CCNA_01078	0.80	-2.2
1,183,907	-		CCNA_01078	0.89	-0.9
1,183,927	+				-2.7
1,183,946	+				+0.9
1,183,981	+				-1.6
1,184,002	-				+0.2
1,184,030	+				-1.5
1,184,030	+				-0.1
1,184,032	-		CCNA_01079	0.10	+0.4
1,184,038	-		CCNA_01079	0.14	-0.2
1,184,038	-		CCNA_01079	0.14	-0.7
1,184,038	-		CCNA_01079	0.14	+0.8
1,184,038	-		CCNA_01079	0.14	+0.9
1,184,057	+		CCNA_01079	0.24	-0.0
1,184,073	-		CCNA_01079	0.33	+0.2
1,184,088	+		CCNA_01079	0.42	+2.4
1,184,088	+		CCNA_01079	0.42	+0.2
1,184,096	-		CCNA_01079	0.46	+0.1
1,184,105	+		CCNA_01079	0.51	+0.1
1,184,120	+		CCNA_01079	0.60	+0.5
1,184,145	+		CCNA_01079	0.74	+0.2
1,184,145	+		CCNA_01079	0.74	-0.4
1,184,153	-		CCNA_01079	0.79	-0.2
1,184,198	+				-0.6
1,184,206	-				-0.1
1,184,244	+				+0.5
1,184,279	+				-0.2
1,184,320	+		CCNA_01080	0.12	+0.9
1,184,325	+		CCNA_01080	0.13	+1.8
1,184,334	-		CCNA_01080	0.14	-0.7
1,184,368	+		CCNA_01080	0.20	+2.4
1,184,371	-		CCNA_01080	0.21	-2.1
1,184,379	+		CCNA_01080	0.22	-0.1
1,184,394	+		CCNA_01080	0.25	+0.3
1,184,399	+		CCNA_01080	0.26	+1.5
1,184,399	+		CCNA_01080	0.26	+1.5
1,184,408	+		CCNA_01080	0.27	+1.1
1,184,412	-		CCNA_01080	0.28	+0.4
1,184,419	+		CCNA_01080	0.29	+0.3
1,184,424	+		CCNA_01080	0.30	+0.4
1,184,424	+		CCNA_01080	0.30	-0.1
1,184,432	-		CCNA_01080	0.32	+0.1
1,184,438	+		CCNA_01080	0.33	+1.0
1,184,465	+		CCNA_01080	0.37	+1.2
1,184,491	+		CCNA_01080	0.42	-0.4
1,184,499	-		CCNA_01080	0.43	-1.1
1,184,524	+		CCNA_01080	0.48	+1.1
1,184,524	+		CCNA_01080	0.48	-0.7
1,184,524	+		CCNA_01080	0.48	+0.5
1,184,524	+		CCNA_01080	0.48	+0.1
1,184,524	+		CCNA_01080	0.48	+2.2
1,184,524	+		CCNA_01080	0.48	+0.1
1,184,524	+		CCNA_01080	0.48	+0.4
1,184,524	+		CCNA_01080	0.48	-0.6
1,184,524	+		CCNA_01080	0.48	+0.9
1,184,524	+		CCNA_01080	0.48	+0.8
1,184,524	+		CCNA_01080	0.48	+1.3
1,184,524	+		CCNA_01080	0.48	+0.9
1,184,524	+		CCNA_01080	0.48	+0.4
1,184,524	+		CCNA_01080	0.48	-0.0
1,184,524	-		CCNA_01080	0.48	-0.9
1,184,530	-		CCNA_01080	0.49	-1.3
1,184,532	-		CCNA_01080	0.49	-0.6
1,184,532	-		CCNA_01080	0.49	+2.4
1,184,532	-		CCNA_01080	0.49	-0.0
1,184,532	-		CCNA_01080	0.49	+0.3
1,184,532	-		CCNA_01080	0.49	-1.6
1,184,532	-		CCNA_01080	0.49	-0.4
1,184,532	-		CCNA_01080	0.49	-0.7
1,184,532	-		CCNA_01080	0.49	+1.3
1,184,532	-		CCNA_01080	0.49	-1.1
1,184,532	-		CCNA_01080	0.49	-1.1
1,184,532	-		CCNA_01080	0.49	-0.1
1,184,534	+		CCNA_01080	0.50	+2.0
1,184,537	-		CCNA_01080	0.50	-0.6
1,184,542	-		CCNA_01080	0.51	-1.7
1,184,580	+		CCNA_01080	0.58	-0.5
1,184,612	-		CCNA_01080	0.63	+1.0
1,184,619	+		CCNA_01080	0.65	+1.3
1,184,680	+		CCNA_01080	0.76	-0.6
1,184,688	-		CCNA_01080	0.77	+0.4
1,184,707	-		CCNA_01080	0.80	-3.7
1,184,713	+		CCNA_01080	0.81	+0.0
1,184,754	-		CCNA_01080	0.89	+0.7
1,184,756	-		CCNA_01080	0.89	+0.7
1,184,756	-		CCNA_01080	0.89	+2.4
1,184,791	+				-0.2
1,184,803	+				+1.3
1,184,859	+				+4.0
1,184,886	+				+1.8
1,184,894	-				+0.1
1,184,904	-				-1.3
1,184,927	+				+0.3
1,184,927	+				+0.4
1,184,937	+				+2.9
1,184,945	-				-1.1
1,184,955	-		CCNA_01081	0.12	+0.9
1,184,962	+		CCNA_01081	0.13	+1.6
1,184,970	-		CCNA_01081	0.14	+1.1
1,184,977	+		CCNA_01081	0.15	+1.6
1,184,977	+		CCNA_01081	0.15	+0.9
1,184,982	+		CCNA_01081	0.15	+1.0
1,184,985	-		CCNA_01081	0.16	+1.0
1,184,990	-		CCNA_01081	0.16	-0.2
1,185,005	-		CCNA_01081	0.18	+1.1
1,185,037	-		CCNA_01081	0.22	-0.7
1,185,037	-		CCNA_01081	0.22	+0.2
1,185,037	-		CCNA_01081	0.22	-0.4
1,185,053	-		CCNA_01081	0.24	-0.5
1,185,100	+		CCNA_01081	0.30	+1.3
1,185,102	-		CCNA_01081	0.31	+1.3
1,185,106	+		CCNA_01081	0.31	+1.8
1,185,114	-		CCNA_01081	0.32	-1.5
1,185,123	+		CCNA_01081	0.33	-1.0
1,185,126	-		CCNA_01081	0.34	-0.8
1,185,176	-		CCNA_01081	0.40	+0.0
1,185,195	+		CCNA_01081	0.43	+1.1
1,185,195	+		CCNA_01081	0.43	-1.7
1,185,195	+		CCNA_01081	0.43	+0.5
1,185,195	+		CCNA_01081	0.43	-1.7
1,185,198	-		CCNA_01081	0.43	-0.2
1,185,202	+		CCNA_01081	0.43	+0.5
1,185,202	+		CCNA_01081	0.43	+3.4
1,185,203	+		CCNA_01081	0.44	+1.1
1,185,203	-		CCNA_01081	0.44	-0.2
1,185,203	-		CCNA_01081	0.44	-0.1
1,185,204	+		CCNA_01081	0.44	+0.4
1,185,212	-		CCNA_01081	0.45	-1.0
1,185,212	-		CCNA_01081	0.45	-1.6
1,185,230	-		CCNA_01081	0.47	-1.6
1,185,230	-		CCNA_01081	0.47	+1.0
1,185,237	+		CCNA_01081	0.48	+0.7
1,185,237	+		CCNA_01081	0.48	+0.4
1,185,237	+		CCNA_01081	0.48	-0.1
1,185,263	+		CCNA_01081	0.51	-1.2
1,185,275	-		CCNA_01081	0.53	-0.2
1,185,277	+		CCNA_01081	0.53	-0.9
1,185,300	+		CCNA_01081	0.56	+1.4
1,185,315	-		CCNA_01081	0.58	-1.0
1,185,315	-		CCNA_01081	0.58	+0.1
1,185,328	+		CCNA_01081	0.60	-0.6
1,185,336	-		CCNA_01081	0.61	+1.3
1,185,336	-		CCNA_01081	0.61	+0.6
1,185,336	-		CCNA_01081	0.61	-1.0
1,185,336	-		CCNA_01081	0.61	-0.5
1,185,387	+		CCNA_01081	0.67	+0.1
1,185,394	-		CCNA_01081	0.68	-1.9
1,185,399	-		CCNA_01081	0.69	+1.3
1,185,401	+		CCNA_01081	0.69	-1.0
1,185,436	-		CCNA_01081	0.73	-1.4
1,185,453	-		CCNA_01081	0.76	-1.7
1,185,480	+		CCNA_01081	0.79	+1.5
1,185,491	+		CCNA_01081	0.81	+0.1
1,185,499	-		CCNA_01081	0.82	-1.6
1,185,528	+		CCNA_01081	0.85	+0.0
1,185,528	+		CCNA_01081	0.85	-0.1
1,185,528	+		CCNA_01081	0.85	+2.0
1,185,528	+		CCNA_01081	0.85	+1.5
1,185,536	-		CCNA_01081	0.86	-0.3
1,185,536	-		CCNA_01081	0.86	-2.0
1,185,536	-		CCNA_01081	0.86	+0.7
1,185,549	+		CCNA_01081	0.88	+1.1
1,185,549	+		CCNA_01081	0.88	+1.6
1,185,549	+		CCNA_01081	0.88	+1.1
1,185,549	+		CCNA_01081	0.88	+2.0
1,185,549	+				-1.6
1,185,549	+		CCNA_01081	0.88	+1.4
1,185,549	+		CCNA_01081	0.88	+1.2
1,185,549	+		CCNA_01081	0.88	+1.2
1,185,549	+		CCNA_01081	0.88	+0.3
1,185,549	+		CCNA_01081	0.88	-0.1
1,185,556	+		CCNA_01081	0.89	+0.7
1,185,557	-		CCNA_01081	0.89	+1.4
1,185,557	-		CCNA_01081	0.89	+0.6
1,185,557	-		CCNA_01081	0.89	-1.3
1,185,557	-		CCNA_01081	0.89	+0.3
1,185,557	-		CCNA_01081	0.89	-0.4
1,185,557	-		CCNA_01081	0.89	-1.1
1,185,557	-		CCNA_01081	0.89	-0.5
1,185,557	-		CCNA_01081	0.89	-0.3
1,185,557	-		CCNA_01081	0.89	-0.4
1,185,557	-		CCNA_01081	0.89	-0.8
1,185,564	-		CCNA_01081	0.90	-0.9
1,185,587	+				+1.7
1,185,594	+				+1.4
1,185,595	-				-2.1
1,185,595	-				+0.9
1,185,629	-				+0.4
1,185,643	+				+1.2
1,185,646	-				+1.4
1,185,663	-				-0.7
1,185,684	+				-0.8
1,185,736	-				+0.1
1,185,751	+				+1.0
1,185,752	+				+0.2
1,185,755	-				+0.1
1,185,759	-				+0.4
1,185,773	+		CCNA_01082	0.11	+3.4
1,185,773	+		CCNA_01082	0.11	+0.5
1,185,778	+		CCNA_01082	0.11	+2.2
1,185,792	-		CCNA_01082	0.12	-0.2