Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26005 and BWI76_RS26010 are separated by 31 nucleotides BWI76_RS26010 and BWI76_RS26015 overlap by 11 nucleotides BWI76_RS26015 and BWI76_RS26020 are separated by 108 nucleotides BWI76_RS26020 and BWI76_RS26025 are separated by 277 nucleotides
BWI76_RS26005: BWI76_RS26005 - glutamine amidotransferase, at 5,375,157 to 5,375,720
_RS26005
BWI76_RS26010: BWI76_RS26010 - cell filamentation protein Fic, at 5,375,752 to 5,376,354
_RS26010
BWI76_RS26015: BWI76_RS26015 - DUF2559 domain-containing protein, at 5,376,344 to 5,376,511
_RS26015
BWI76_RS26020: BWI76_RS26020 - peptidylprolyl isomerase A, at 5,376,620 to 5,377,189
_RS26020
BWI76_RS26025: BWI76_RS26025 - MFS transporter TsgA, at 5,377,467 to 5,378,651
_RS26025
Position (kb) 5376
5377
5378 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5375.781 kb on - strand at 5375.781 kb on - strand at 5375.850 kb on - strand, within BWI76_RS26010 at 5375.870 kb on - strand, within BWI76_RS26010 at 5375.982 kb on - strand, within BWI76_RS26010 at 5376.018 kb on + strand, within BWI76_RS26010 at 5376.137 kb on - strand, within BWI76_RS26010 at 5376.275 kb on + strand, within BWI76_RS26010 at 5376.299 kb on + strand at 5376.307 kb on - strand at 5376.388 kb on - strand, within BWI76_RS26015 at 5376.602 kb on - strand at 5376.626 kb on - strand at 5376.662 kb on - strand at 5376.679 kb on + strand, within BWI76_RS26020 at 5376.730 kb on - strand, within BWI76_RS26020 at 5376.751 kb on - strand, within BWI76_RS26020 at 5376.825 kb on - strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5376.830 kb on + strand, within BWI76_RS26020 at 5377.089 kb on - strand, within BWI76_RS26020 at 5377.233 kb on - strand at 5377.282 kb on + strand at 5377.291 kb on - strand at 5377.437 kb on - strand at 5377.448 kb on - strand at 5377.464 kb on + strand at 5377.632 kb on + strand, within BWI76_RS26025 at 5377.655 kb on + strand, within BWI76_RS26025 at 5377.724 kb on - strand, within BWI76_RS26025 at 5377.788 kb on - strand, within BWI76_RS26025 at 5377.790 kb on + strand, within BWI76_RS26025 at 5378.114 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.124 kb on - strand, within BWI76_RS26025
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 5,375,781 - -0.4 5,375,781 - -0.4 5,375,850 - BWI76_RS26010 0.16 +1.0 5,375,870 - BWI76_RS26010 0.20 +0.7 5,375,982 - BWI76_RS26010 0.38 +0.3 5,376,018 + BWI76_RS26010 0.44 +1.1 5,376,137 - BWI76_RS26010 0.64 -0.1 5,376,275 + BWI76_RS26010 0.87 -0.1 5,376,299 + -0.0 5,376,307 - -1.9 5,376,388 - BWI76_RS26015 0.26 -0.1 5,376,602 - +0.6 5,376,626 - -0.1 5,376,662 - -1.0 5,376,679 + BWI76_RS26020 0.10 -0.4 5,376,730 - BWI76_RS26020 0.19 -0.8 5,376,751 - BWI76_RS26020 0.23 -1.7 5,376,825 - BWI76_RS26020 0.36 -1.3 5,376,830 + BWI76_RS26020 0.37 -3.3 5,376,830 + BWI76_RS26020 0.37 -0.1 5,376,830 + BWI76_RS26020 0.37 -2.1 5,377,089 - BWI76_RS26020 0.82 -1.1 5,377,233 - +1.6 5,377,282 + -0.9 5,377,291 - +0.9 5,377,437 - +0.2 5,377,448 - +0.5 5,377,464 + +0.1 5,377,632 + BWI76_RS26025 0.14 -0.8 5,377,655 + BWI76_RS26025 0.16 -0.1 5,377,724 - BWI76_RS26025 0.22 +0.2 5,377,788 - BWI76_RS26025 0.27 +0.1 5,377,790 + BWI76_RS26025 0.27 +1.4 5,378,114 + BWI76_RS26025 0.55 +0.1 5,378,116 + BWI76_RS26025 0.55 -0.2 5,378,116 + BWI76_RS26025 0.55 +1.7 5,378,124 - BWI76_RS26025 0.55 +0.3
Or see this region's nucleotide sequence