Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22870 and BWI76_RS22875 are separated by 536 nucleotides BWI76_RS22875 and BWI76_RS22880 are separated by 53 nucleotides
BWI76_RS22870: BWI76_RS22870 - LOG family protein, at 4,770,874 to 4,772,241
_RS22870
BWI76_RS22875: BWI76_RS22875 - serine transporter, at 4,772,778 to 4,774,067
_RS22875
BWI76_RS22880: BWI76_RS22880 - L-serine ammonia-lyase, at 4,774,121 to 4,775,488
_RS22880
Position (kb)
4772
4773
4774
4775 Strain fitness (log2 ratio)
-1
0
1 at 4771.784 kb on + strand, within BWI76_RS22870 at 4771.916 kb on - strand, within BWI76_RS22870 at 4771.989 kb on + strand, within BWI76_RS22870 at 4772.059 kb on - strand, within BWI76_RS22870 at 4772.103 kb on - strand, within BWI76_RS22870 at 4772.186 kb on + strand at 4772.217 kb on - strand at 4772.286 kb on - strand at 4772.527 kb on - strand at 4772.785 kb on - strand at 4772.889 kb on + strand at 4772.971 kb on + strand, within BWI76_RS22875 at 4773.154 kb on + strand, within BWI76_RS22875 at 4773.274 kb on + strand, within BWI76_RS22875 at 4773.371 kb on - strand, within BWI76_RS22875 at 4773.434 kb on + strand, within BWI76_RS22875 at 4773.515 kb on - strand, within BWI76_RS22875 at 4773.542 kb on + strand, within BWI76_RS22875 at 4773.624 kb on + strand, within BWI76_RS22875 at 4773.632 kb on - strand, within BWI76_RS22875 at 4773.886 kb on + strand, within BWI76_RS22875 at 4773.947 kb on + strand at 4774.100 kb on + strand at 4774.168 kb on + strand at 4774.223 kb on - strand at 4774.382 kb on - strand, within BWI76_RS22880 at 4774.501 kb on + strand, within BWI76_RS22880
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 4,771,784 + BWI76_RS22870 0.67 -0.8 4,771,916 - BWI76_RS22870 0.76 -1.3 4,771,989 + BWI76_RS22870 0.82 +0.0 4,772,059 - BWI76_RS22870 0.87 -0.4 4,772,103 - BWI76_RS22870 0.90 +0.0 4,772,186 + +0.6 4,772,217 - +0.7 4,772,286 - -0.0 4,772,527 - +0.7 4,772,785 - +0.5 4,772,889 + -0.6 4,772,971 + BWI76_RS22875 0.15 -0.1 4,773,154 + BWI76_RS22875 0.29 -0.6 4,773,274 + BWI76_RS22875 0.38 -0.7 4,773,371 - BWI76_RS22875 0.46 -0.7 4,773,434 + BWI76_RS22875 0.51 +0.0 4,773,515 - BWI76_RS22875 0.57 +0.2 4,773,542 + BWI76_RS22875 0.59 -1.2 4,773,624 + BWI76_RS22875 0.66 +0.2 4,773,632 - BWI76_RS22875 0.66 +0.1 4,773,886 + BWI76_RS22875 0.86 +0.7 4,773,947 + -0.2 4,774,100 + +0.2 4,774,168 + +0.2 4,774,223 - -0.5 4,774,382 - BWI76_RS22880 0.19 -0.3 4,774,501 + BWI76_RS22880 0.28 -0.0
Or see this region's nucleotide sequence