Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21090

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21085 and BWI76_RS21090 are separated by 26 nucleotidesBWI76_RS21090 and BWI76_RS21095 are separated by 275 nucleotides BWI76_RS21085: BWI76_RS21085 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 4,411,249 to 4,412,370 _RS21085 BWI76_RS21090: BWI76_RS21090 - cytoskeletal protein RodZ, at 4,412,397 to 4,413,356 _RS21090 BWI76_RS21095: BWI76_RS21095 - bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN, at 4,413,632 to 4,414,798 _RS21095 Position (kb) 4412 4413 4414Strain fitness (log2 ratio) -1 0 1 2at 4412.571 kb on - strand, within BWI76_RS21090at 4412.571 kb on - strand, within BWI76_RS21090at 4412.757 kb on - strand, within BWI76_RS21090at 4412.785 kb on - strandat 4413.410 kb on - strandat 4413.440 kb on + strandat 4413.450 kb on - strandat 4413.450 kb on - strandat 4413.612 kb on - strandat 4413.677 kb on - strandat 4413.677 kb on - strandat 4413.679 kb on + strandat 4414.089 kb on + strand, within BWI76_RS21095

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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4,412,571 - BWI76_RS21090 0.18 -0.2
4,412,571 - BWI76_RS21090 0.18 -0.3
4,412,757 - BWI76_RS21090 0.38 -0.3
4,412,785 - +2.1
4,413,410 - -0.7
4,413,440 + +0.2
4,413,450 - -0.2
4,413,450 - +0.0
4,413,612 - -0.2
4,413,677 - +0.5
4,413,677 - -0.1
4,413,679 + -0.6
4,414,089 + BWI76_RS21095 0.39 -0.7

Or see this region's nucleotide sequence