Experiment: Cephalothin 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17175 and BWI76_RS17180 are separated by 92 nucleotides BWI76_RS17180 and BWI76_RS17185 are separated by 106 nucleotides BWI76_RS17185 and BWI76_RS17190 are separated by 19 nucleotides BWI76_RS17190 and BWI76_RS17195 are separated by 211 nucleotides
BWI76_RS17175: BWI76_RS17175 - 6-phosphofructokinase II, at 3,560,009 to 3,560,941
_RS17175
BWI76_RS17180: BWI76_RS17180 - hypothetical protein, at 3,561,034 to 3,561,318
_RS17180
BWI76_RS17185: BWI76_RS17185 - fructosamine kinase family protein, at 3,561,425 to 3,562,297
_RS17185
BWI76_RS17190: BWI76_RS17190 - TonB system transport protein TonB, at 3,562,317 to 3,563,054
_RS17190
BWI76_RS17195: BWI76_RS17195 - hypothetical protein, at 3,563,266 to 3,563,562
_RS17195
Position (kb)
3561
3562
3563 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3560.934 kb on + strand at 3561.067 kb on + strand, within BWI76_RS17180 at 3561.144 kb on - strand, within BWI76_RS17180 at 3561.261 kb on + strand, within BWI76_RS17180 at 3561.767 kb on + strand, within BWI76_RS17185 at 3562.198 kb on + strand, within BWI76_RS17185 at 3562.548 kb on + strand, within BWI76_RS17190 at 3562.960 kb on - strand, within BWI76_RS17190 at 3562.965 kb on - strand, within BWI76_RS17190
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml remove 3,560,934 + +0.5 3,561,067 + BWI76_RS17180 0.12 +0.4 3,561,144 - BWI76_RS17180 0.39 +0.0 3,561,261 + BWI76_RS17180 0.80 +0.8 3,561,767 + BWI76_RS17185 0.39 +0.0 3,562,198 + BWI76_RS17185 0.89 -2.8 3,562,548 + BWI76_RS17190 0.31 +0.4 3,562,960 - BWI76_RS17190 0.87 +0.0 3,562,965 - BWI76_RS17190 0.88 +0.3
Or see this region's nucleotide sequence