Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11190

Experiment: Cephalothin 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11185 and BWI76_RS11190 are separated by 353 nucleotidesBWI76_RS11190 and BWI76_RS11195 are separated by 249 nucleotidesBWI76_RS11195 and BWI76_RS11200 are separated by 218 nucleotides BWI76_RS11185: BWI76_RS11185 - ligand-gated channel protein, at 2,356,798 to 2,358,975 _RS11185 BWI76_RS11190: BWI76_RS11190 - putative TetR/AcrR family transcriptional regulatory protein, at 2,359,329 to 2,359,964 _RS11190 BWI76_RS11195: BWI76_RS11195 - multiple stress resistance protein BhsA, at 2,360,214 to 2,360,471 _RS11195 BWI76_RS11200: BWI76_RS11200 - transpeptidase, at 2,360,690 to 2,361,649 _RS11200 Position (kb) 2359 2360Strain fitness (log2 ratio) -1 0 1 2at 2358.678 kb on - strand, within BWI76_RS11185at 2359.082 kb on + strandat 2359.090 kb on - strandat 2359.095 kb on - strandat 2359.256 kb on - strandat 2359.399 kb on + strand, within BWI76_RS11190at 2359.895 kb on - strand, within BWI76_RS11190at 2360.202 kb on + strandat 2360.420 kb on + strand, within BWI76_RS11195at 2360.529 kb on - strandat 2360.737 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.16 mg/ml
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2,358,678 - BWI76_RS11185 0.86 +0.4
2,359,082 + -0.3
2,359,090 - -0.1
2,359,095 - -0.6
2,359,256 - +0.4
2,359,399 + BWI76_RS11190 0.11 +2.3
2,359,895 - BWI76_RS11190 0.89 +2.5
2,360,202 + -0.2
2,360,420 + BWI76_RS11195 0.80 +0.6
2,360,529 - +0.1
2,360,737 + +0.2

Or see this region's nucleotide sequence