Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0453 and BT0454 are separated by 143 nucleotides BT0454 and BT0455 are separated by 193 nucleotides BT0455 and BT0456 overlap by 4 nucleotides
BT0453: BT0453 - N-acylglucosamine 2-epimerase (NCBI ptt file), at 555,562 to 556,725
BT0453
BT0454: BT0454 - arabinose-proton symporter (Arabinose transporter) (NCBI ptt file), at 556,869 to 557,261
BT0454
BT0455: BT0455 - sialidase (Neuraminidase) (NCBI ptt file), at 557,455 to 559,089
BT0455
BT0456: BT0456 - beta-hexosaminidase precursor (NCBI ptt file), at 559,086 to 561,098
BT0456
Position (kb) 557
558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 556.552 kb on + strand, within BT0453 at 556.750 kb on + strand at 556.751 kb on - strand at 556.836 kb on + strand at 556.850 kb on + strand at 557.352 kb on + strand at 557.417 kb on + strand at 557.485 kb on - strand at 557.495 kb on + strand at 557.578 kb on - strand at 557.583 kb on - strand at 557.673 kb on - strand, within BT0455 at 557.749 kb on + strand, within BT0455 at 557.749 kb on + strand, within BT0455 at 557.752 kb on - strand, within BT0455 at 558.112 kb on + strand, within BT0455 at 558.113 kb on - strand, within BT0455 at 558.113 kb on - strand, within BT0455 at 558.124 kb on + strand, within BT0455 at 558.127 kb on - strand, within BT0455 at 558.129 kb on + strand, within BT0455 at 558.130 kb on - strand, within BT0455 at 558.130 kb on - strand, within BT0455 at 558.152 kb on - strand, within BT0455 at 558.156 kb on - strand, within BT0455 at 558.276 kb on + strand, within BT0455 at 558.277 kb on - strand, within BT0455 at 558.426 kb on + strand, within BT0455 at 558.451 kb on - strand, within BT0455 at 558.595 kb on - strand, within BT0455 at 558.595 kb on - strand, within BT0455 at 558.659 kb on + strand, within BT0455 at 558.798 kb on - strand, within BT0455 at 558.802 kb on - strand, within BT0455 at 558.835 kb on - strand, within BT0455 at 558.847 kb on - strand, within BT0455 at 558.852 kb on + strand, within BT0455 at 558.898 kb on - strand, within BT0455 at 558.907 kb on - strand, within BT0455 at 558.985 kb on - strand at 559.138 kb on - strand at 559.139 kb on + strand at 559.142 kb on - strand at 559.142 kb on - strand at 559.284 kb on - strand at 559.311 kb on - strand, within BT0456 at 559.319 kb on - strand, within BT0456 at 559.345 kb on + strand, within BT0456 at 559.345 kb on + strand, within BT0456 at 559.411 kb on + strand, within BT0456 at 559.447 kb on + strand, within BT0456 at 559.448 kb on - strand, within BT0456 at 559.497 kb on - strand, within BT0456 at 559.499 kb on + strand, within BT0456 at 559.547 kb on - strand, within BT0456 at 559.558 kb on - strand, within BT0456 at 559.723 kb on - strand, within BT0456 at 559.761 kb on - strand, within BT0456 at 559.923 kb on - strand, within BT0456 at 559.981 kb on - strand, within BT0456 at 560.032 kb on - strand, within BT0456
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant medium with Dimethyl Sulfoxide 2 vol% remove 556,552 + BT0453 0.85 +0.9 556,750 + -0.1 556,751 - -0.8 556,836 + -0.9 556,850 + +0.0 557,352 + -0.7 557,417 + +0.9 557,485 - +0.1 557,495 + -1.9 557,578 - +0.9 557,583 - -0.7 557,673 - BT0455 0.13 -1.4 557,749 + BT0455 0.18 +0.2 557,749 + BT0455 0.18 +0.3 557,752 - BT0455 0.18 -1.1 558,112 + BT0455 0.40 +0.3 558,113 - BT0455 0.40 -2.7 558,113 - BT0455 0.40 -0.7 558,124 + BT0455 0.41 +1.4 558,127 - BT0455 0.41 -0.3 558,129 + BT0455 0.41 -0.1 558,130 - BT0455 0.41 -0.9 558,130 - BT0455 0.41 +0.9 558,152 - BT0455 0.43 +1.9 558,156 - BT0455 0.43 -0.3 558,276 + BT0455 0.50 -0.6 558,277 - BT0455 0.50 -0.1 558,426 + BT0455 0.59 -0.3 558,451 - BT0455 0.61 +1.9 558,595 - BT0455 0.70 +0.3 558,595 - BT0455 0.70 -1.7 558,659 + BT0455 0.74 -0.1 558,798 - BT0455 0.82 +0.2 558,802 - BT0455 0.82 -0.9 558,835 - BT0455 0.84 -0.1 558,847 - BT0455 0.85 -1.1 558,852 + BT0455 0.85 -0.7 558,898 - BT0455 0.88 -0.2 558,907 - BT0455 0.89 +1.9 558,985 - -1.4 559,138 - +1.5 559,139 + -1.2 559,142 - -1.4 559,142 - +0.1 559,284 - -0.7 559,311 - BT0456 0.11 +0.3 559,319 - BT0456 0.12 -0.1 559,345 + BT0456 0.13 +0.3 559,345 + BT0456 0.13 -0.7 559,411 + BT0456 0.16 +1.5 559,447 + BT0456 0.18 -1.3 559,448 - BT0456 0.18 -0.1 559,497 - BT0456 0.20 -0.1 559,499 + BT0456 0.21 -1.7 559,547 - BT0456 0.23 -2.0 559,558 - BT0456 0.23 -0.7 559,723 - BT0456 0.32 -0.1 559,761 - BT0456 0.34 -0.5 559,923 - BT0456 0.42 -0.7 559,981 - BT0456 0.44 +0.9 560,032 - BT0456 0.47 -1.5
Or see this region's nucleotide sequence