Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0573

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0571 and Synpcc7942_0572 overlap by 4 nucleotidesSynpcc7942_0572 and tRNA-Gly are separated by 83 nucleotidestRNA-Gly and Synpcc7942_0573 are separated by 8 nucleotidesSynpcc7942_0573 and Synpcc7942_0574 are separated by 78 nucleotidesSynpcc7942_0574 and Synpcc7942_0575 overlap by 29 nucleotides Synpcc7942_0571: Synpcc7942_0571 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 553,324 to 554,697 _0571 Synpcc7942_0572: Synpcc7942_0572 - hypothetical protein, at 554,694 to 555,134 _0572 Synpcc7942_R0032: tRNA-Gly - tRNA-Gly, at 555,218 to 555,288 tRNA-Gly Synpcc7942_0573: Synpcc7942_0573 - hypothetical protein, at 555,297 to 555,533 _0573 Synpcc7942_0574: Synpcc7942_0574 - hypothetical protein, at 555,612 to 556,442 _0574 Synpcc7942_0575: Synpcc7942_0575 - hypothetical protein, at 556,414 to 556,977 _0575 Position (kb) 555 556Strain fitness (log2 ratio) -2 -1 0 1 2at 554.536 kb on - strand, within Synpcc7942_0571at 554.693 kb on + strandat 554.713 kb on + strandat 554.721 kb on - strandat 554.796 kb on + strand, within Synpcc7942_0572at 554.853 kb on - strand, within Synpcc7942_0572at 554.895 kb on - strand, within Synpcc7942_0572at 554.928 kb on + strand, within Synpcc7942_0572at 554.974 kb on + strandat 555.051 kb on - strand, within Synpcc7942_0572at 555.071 kb on - strand, within Synpcc7942_0572at 555.086 kb on - strand, within Synpcc7942_0572at 555.088 kb on + strand, within Synpcc7942_0572at 555.098 kb on - strandat 555.119 kb on - strandat 555.139 kb on - strandat 555.155 kb on + strandat 555.157 kb on + strandat 555.157 kb on + strandat 555.157 kb on + strandat 555.160 kb on - strandat 555.165 kb on - strandat 555.165 kb on - strandat 555.165 kb on - strandat 555.176 kb on + strandat 555.182 kb on - strandat 555.182 kb on - strandat 555.294 kb on + strandat 555.302 kb on + strandat 555.314 kb on + strandat 555.345 kb on + strand, within Synpcc7942_0573at 555.413 kb on + strand, within Synpcc7942_0573at 555.419 kb on - strand, within Synpcc7942_0573at 555.477 kb on + strand, within Synpcc7942_0573at 555.491 kb on - strand, within Synpcc7942_0573at 555.510 kb on - strandat 555.518 kb on + strandat 555.553 kb on + strandat 555.558 kb on + strandat 555.602 kb on - strandat 555.633 kb on - strandat 555.648 kb on + strandat 555.664 kb on + strandat 555.664 kb on + strandat 555.664 kb on + strandat 555.677 kb on + strandat 555.681 kb on - strandat 555.696 kb on - strand, within Synpcc7942_0574at 555.721 kb on - strand, within Synpcc7942_0574at 555.733 kb on + strand, within Synpcc7942_0574at 555.749 kb on + strand, within Synpcc7942_0574at 555.820 kb on + strand, within Synpcc7942_0574at 555.825 kb on + strand, within Synpcc7942_0574at 555.895 kb on - strand, within Synpcc7942_0574at 555.897 kb on + strand, within Synpcc7942_0574at 555.897 kb on + strand, within Synpcc7942_0574at 555.897 kb on + strand, within Synpcc7942_0574at 555.897 kb on + strand, within Synpcc7942_0574at 555.897 kb on + strand, within Synpcc7942_0574at 555.905 kb on - strand, within Synpcc7942_0574at 555.913 kb on + strand, within Synpcc7942_0574at 555.915 kb on + strand, within Synpcc7942_0574at 555.921 kb on - strand, within Synpcc7942_0574at 555.921 kb on - strand, within Synpcc7942_0574at 555.921 kb on - strand, within Synpcc7942_0574at 555.921 kb on - strand, within Synpcc7942_0574at 555.987 kb on + strand, within Synpcc7942_0574at 555.987 kb on + strand, within Synpcc7942_0574at 555.997 kb on + strand, within Synpcc7942_0574at 555.998 kb on - strand, within Synpcc7942_0574at 556.005 kb on - strand, within Synpcc7942_0574at 556.018 kb on - strand, within Synpcc7942_0574at 556.023 kb on - strand, within Synpcc7942_0574at 556.027 kb on + strand, within Synpcc7942_0574at 556.037 kb on - strand, within Synpcc7942_0574at 556.037 kb on - strand, within Synpcc7942_0574at 556.037 kb on - strand, within Synpcc7942_0574at 556.149 kb on + strand, within Synpcc7942_0574at 556.153 kb on - strand, within Synpcc7942_0574at 556.162 kb on - strand, within Synpcc7942_0574at 556.162 kb on - strand, within Synpcc7942_0574at 556.181 kb on - strand, within Synpcc7942_0574at 556.233 kb on + strand, within Synpcc7942_0574at 556.241 kb on - strand, within Synpcc7942_0574at 556.253 kb on - strand, within Synpcc7942_0574at 556.257 kb on + strand, within Synpcc7942_0574at 556.286 kb on - strand, within Synpcc7942_0574at 556.289 kb on - strand, within Synpcc7942_0574at 556.311 kb on + strand, within Synpcc7942_0574at 556.350 kb on - strand, within Synpcc7942_0574at 556.390 kb on - strandat 556.395 kb on - strandat 556.412 kb on + strandat 556.460 kb on - strandat 556.462 kb on - strandat 556.467 kb on - strandat 556.482 kb on - strand, within Synpcc7942_0575at 556.482 kb on - strand, within Synpcc7942_0575at 556.484 kb on + strand, within Synpcc7942_0575at 556.492 kb on - strand, within Synpcc7942_0575at 556.527 kb on + strand, within Synpcc7942_0575

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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554,536 - Synpcc7942_0571 0.88 -2.0
554,693 + -0.6
554,713 + +0.8
554,721 - -0.5
554,796 + Synpcc7942_0572 0.23 +0.2
554,853 - Synpcc7942_0572 0.36 -1.3
554,895 - Synpcc7942_0572 0.46 -1.6
554,928 + Synpcc7942_0572 0.53 -0.9
554,974 + -0.6
555,051 - Synpcc7942_0572 0.81 +0.5
555,071 - Synpcc7942_0572 0.85 -1.1
555,086 - Synpcc7942_0572 0.89 -0.3
555,088 + Synpcc7942_0572 0.89 -0.3
555,098 - -0.6
555,119 - +0.6
555,139 - -0.0
555,155 + -0.2
555,157 + +0.5
555,157 + -1.4
555,157 + -1.8
555,160 - +0.0
555,165 - -0.1
555,165 - -0.0
555,165 - -0.3
555,176 + +1.3
555,182 - +0.6
555,182 - -0.8
555,294 + +1.8
555,302 + -1.3
555,314 + +1.0
555,345 + Synpcc7942_0573 0.20 -1.6
555,413 + Synpcc7942_0573 0.49 -0.5
555,419 - Synpcc7942_0573 0.51 -1.4
555,477 + Synpcc7942_0573 0.76 -1.0
555,491 - Synpcc7942_0573 0.82 -0.2
555,510 - +0.4
555,518 + +0.1
555,553 + +0.8
555,558 + -1.1
555,602 - -0.5
555,633 - +0.1
555,648 + -0.8
555,664 + +0.1
555,664 + +0.2
555,664 + -2.3
555,677 + -0.4
555,681 - -0.2
555,696 - Synpcc7942_0574 0.10 +0.2
555,721 - Synpcc7942_0574 0.13 +0.1
555,733 + Synpcc7942_0574 0.15 +0.6
555,749 + Synpcc7942_0574 0.16 +1.3
555,820 + Synpcc7942_0574 0.25 +0.8
555,825 + Synpcc7942_0574 0.26 +0.2
555,895 - Synpcc7942_0574 0.34 +0.5
555,897 + Synpcc7942_0574 0.34 -0.3
555,897 + Synpcc7942_0574 0.34 +0.0
555,897 + Synpcc7942_0574 0.34 +0.4
555,897 + Synpcc7942_0574 0.34 -0.5
555,897 + Synpcc7942_0574 0.34 +0.0
555,905 - Synpcc7942_0574 0.35 +1.0
555,913 + Synpcc7942_0574 0.36 +0.5
555,915 + Synpcc7942_0574 0.36 -1.0
555,921 - Synpcc7942_0574 0.37 -0.5
555,921 - Synpcc7942_0574 0.37 +0.2
555,921 - Synpcc7942_0574 0.37 -1.3
555,921 - Synpcc7942_0574 0.37 -0.6
555,987 + Synpcc7942_0574 0.45 -0.1
555,987 + Synpcc7942_0574 0.45 -1.4
555,997 + Synpcc7942_0574 0.46 +0.5
555,998 - Synpcc7942_0574 0.46 -0.2
556,005 - Synpcc7942_0574 0.47 -0.3
556,018 - Synpcc7942_0574 0.49 +0.2
556,023 - Synpcc7942_0574 0.49 -1.3
556,027 + Synpcc7942_0574 0.50 -0.3
556,037 - Synpcc7942_0574 0.51 -0.5
556,037 - Synpcc7942_0574 0.51 -1.2
556,037 - Synpcc7942_0574 0.51 +0.6
556,149 + Synpcc7942_0574 0.65 -0.2
556,153 - Synpcc7942_0574 0.65 +0.9
556,162 - Synpcc7942_0574 0.66 -0.8
556,162 - Synpcc7942_0574 0.66 -0.3
556,181 - Synpcc7942_0574 0.68 +0.5
556,233 + Synpcc7942_0574 0.75 +1.4
556,241 - Synpcc7942_0574 0.76 +0.2
556,253 - Synpcc7942_0574 0.77 +0.0
556,257 + Synpcc7942_0574 0.78 +0.3
556,286 - Synpcc7942_0574 0.81 +1.2
556,289 - Synpcc7942_0574 0.81 +0.6
556,311 + Synpcc7942_0574 0.84 +0.9
556,350 - Synpcc7942_0574 0.89 -0.6
556,390 - -0.0
556,395 - +1.0
556,412 + -0.1
556,460 - -0.8
556,462 - +1.6
556,467 - +0.4
556,482 - Synpcc7942_0575 0.12 -1.4
556,482 - Synpcc7942_0575 0.12 -0.1
556,484 + Synpcc7942_0575 0.12 +1.7
556,492 - Synpcc7942_0575 0.14 +0.0
556,527 + Synpcc7942_0575 0.20 +0.1

Or see this region's nucleotide sequence