Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_536 and Pf6N2E2_537 overlap by 4 nucleotides Pf6N2E2_537 and Pf6N2E2_538 overlap by 1 nucleotides
Pf6N2E2_536 - Na(+) H(+) antiporter subunit D, at 602,844 to 604,529
_536
Pf6N2E2_537 - Na(+) H(+) antiporter subunit C, at 604,526 to 604,870
_537
Pf6N2E2_538 - Na(+) H(+) antiporter subunit A; Na(+) H(+) antiporter subunit B, at 604,870 to 607,794
_538
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1 at 603.688 kb on + strand, within Pf6N2E2_536 at 603.688 kb on + strand, within Pf6N2E2_536 at 603.689 kb on - strand, within Pf6N2E2_536 at 603.748 kb on + strand, within Pf6N2E2_536 at 603.808 kb on + strand, within Pf6N2E2_536 at 603.808 kb on + strand, within Pf6N2E2_536 at 603.808 kb on + strand, within Pf6N2E2_536 at 603.970 kb on + strand, within Pf6N2E2_536 at 603.970 kb on + strand, within Pf6N2E2_536 at 603.971 kb on - strand, within Pf6N2E2_536 at 603.971 kb on - strand, within Pf6N2E2_536 at 603.971 kb on - strand, within Pf6N2E2_536 at 603.971 kb on - strand, within Pf6N2E2_536 at 604.027 kb on + strand, within Pf6N2E2_536 at 604.027 kb on + strand, within Pf6N2E2_536 at 604.028 kb on - strand, within Pf6N2E2_536 at 604.028 kb on - strand, within Pf6N2E2_536 at 604.028 kb on - strand, within Pf6N2E2_536 at 604.028 kb on - strand, within Pf6N2E2_536 at 604.098 kb on + strand, within Pf6N2E2_536 at 604.099 kb on - strand, within Pf6N2E2_536 at 604.099 kb on - strand, within Pf6N2E2_536 at 604.150 kb on + strand, within Pf6N2E2_536 at 604.330 kb on + strand, within Pf6N2E2_536 at 604.372 kb on + strand at 604.372 kb on + strand at 604.373 kb on - strand at 604.668 kb on + strand, within Pf6N2E2_537 at 604.668 kb on + strand, within Pf6N2E2_537 at 604.668 kb on + strand, within Pf6N2E2_537 at 604.668 kb on + strand, within Pf6N2E2_537 at 604.669 kb on - strand, within Pf6N2E2_537 at 604.669 kb on - strand, within Pf6N2E2_537 at 604.761 kb on + strand, within Pf6N2E2_537 at 604.769 kb on + strand, within Pf6N2E2_537 at 604.769 kb on + strand, within Pf6N2E2_537 at 604.770 kb on - strand, within Pf6N2E2_537 at 604.838 kb on + strand at 604.839 kb on - strand at 604.923 kb on + strand at 604.991 kb on + strand at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.201 kb on + strand, within Pf6N2E2_538 at 605.202 kb on - strand, within Pf6N2E2_538 at 605.202 kb on - strand, within Pf6N2E2_538 at 605.202 kb on - strand, within Pf6N2E2_538 at 605.282 kb on + strand, within Pf6N2E2_538 at 605.282 kb on + strand, within Pf6N2E2_538 at 605.283 kb on - strand, within Pf6N2E2_538 at 605.335 kb on + strand, within Pf6N2E2_538 at 605.597 kb on + strand, within Pf6N2E2_538 at 605.597 kb on + strand, within Pf6N2E2_538 at 605.598 kb on - strand, within Pf6N2E2_538 at 605.598 kb on - strand, within Pf6N2E2_538 at 605.643 kb on - strand, within Pf6N2E2_538
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 603,688 + Pf6N2E2_536 0.50 -0.3 603,688 + Pf6N2E2_536 0.50 +0.7 603,689 - Pf6N2E2_536 0.50 +0.8 603,748 + Pf6N2E2_536 0.54 +0.5 603,808 + Pf6N2E2_536 0.57 +0.5 603,808 + Pf6N2E2_536 0.57 +0.3 603,808 + Pf6N2E2_536 0.57 +1.2 603,970 + Pf6N2E2_536 0.67 -0.6 603,970 + Pf6N2E2_536 0.67 -0.3 603,971 - Pf6N2E2_536 0.67 +1.0 603,971 - Pf6N2E2_536 0.67 +0.1 603,971 - Pf6N2E2_536 0.67 +0.4 603,971 - Pf6N2E2_536 0.67 +1.2 604,027 + Pf6N2E2_536 0.70 -0.7 604,027 + Pf6N2E2_536 0.70 -1.6 604,028 - Pf6N2E2_536 0.70 -0.5 604,028 - Pf6N2E2_536 0.70 +0.6 604,028 - Pf6N2E2_536 0.70 -0.2 604,028 - Pf6N2E2_536 0.70 -0.6 604,098 + Pf6N2E2_536 0.74 -1.0 604,099 - Pf6N2E2_536 0.74 +0.1 604,099 - Pf6N2E2_536 0.74 +0.5 604,150 + Pf6N2E2_536 0.77 -0.4 604,330 + Pf6N2E2_536 0.88 -1.5 604,372 + +0.6 604,372 + +0.1 604,373 - -1.5 604,668 + Pf6N2E2_537 0.41 -0.5 604,668 + Pf6N2E2_537 0.41 -0.9 604,668 + Pf6N2E2_537 0.41 -0.3 604,668 + Pf6N2E2_537 0.41 -0.6 604,669 - Pf6N2E2_537 0.41 +0.3 604,669 - Pf6N2E2_537 0.41 -0.9 604,761 + Pf6N2E2_537 0.68 -1.4 604,769 + Pf6N2E2_537 0.70 -1.2 604,769 + Pf6N2E2_537 0.70 -1.3 604,770 - Pf6N2E2_537 0.71 -0.7 604,838 + +0.1 604,839 - +1.3 604,923 + -0.5 604,991 + -0.3 605,201 + Pf6N2E2_538 0.11 -0.9 605,201 + Pf6N2E2_538 0.11 -0.6 605,201 + Pf6N2E2_538 0.11 +0.5 605,201 + Pf6N2E2_538 0.11 -0.6 605,201 + Pf6N2E2_538 0.11 -0.9 605,201 + Pf6N2E2_538 0.11 -0.8 605,201 + Pf6N2E2_538 0.11 -0.1 605,202 - Pf6N2E2_538 0.11 -0.6 605,202 - Pf6N2E2_538 0.11 -1.5 605,202 - Pf6N2E2_538 0.11 -1.7 605,282 + Pf6N2E2_538 0.14 -0.5 605,282 + Pf6N2E2_538 0.14 +0.1 605,283 - Pf6N2E2_538 0.14 +0.1 605,335 + Pf6N2E2_538 0.16 -1.4 605,597 + Pf6N2E2_538 0.25 +0.8 605,597 + Pf6N2E2_538 0.25 -1.6 605,598 - Pf6N2E2_538 0.25 -2.2 605,598 - Pf6N2E2_538 0.25 -2.0 605,643 - Pf6N2E2_538 0.26 +0.2
Or see this region's nucleotide sequence