Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_50

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_48 and Pf6N2E2_6095 are separated by 251 nucleotidesPf6N2E2_6095 and Pf6N2E2_49 are separated by 235 nucleotidesPf6N2E2_49 and Pf6N2E2_50 are separated by 212 nucleotidesPf6N2E2_50 and Pf6N2E2_51 are separated by 15 nucleotidesPf6N2E2_51 and Pf6N2E2_52 are separated by 121 nucleotides Pf6N2E2_48 - FIG00955661: hypothetical protein, at 87,594 to 87,788 _48 Pf6N2E2_6095 - tRNA-Asn-GTT, at 88,040 to 88,112 _6095 Pf6N2E2_49 - FIG00967200: hypothetical protein, at 88,348 to 88,575 _49 Pf6N2E2_50 - Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 88,788 to 89,984 _50 Pf6N2E2_51 - hypothetical protein, at 90,000 to 90,194 _51 Pf6N2E2_52 - Excinuclease ABC subunit B, at 90,316 to 92,331 _52 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.788 kb on + strandat 87.788 kb on + strandat 87.806 kb on + strandat 87.806 kb on + strandat 87.807 kb on - strandat 87.906 kb on + strandat 87.928 kb on + strandat 87.929 kb on - strandat 87.975 kb on + strandat 88.034 kb on - strandat 88.077 kb on - strand, within Pf6N2E2_6095at 88.077 kb on - strand, within Pf6N2E2_6095at 88.093 kb on - strand, within Pf6N2E2_6095at 88.093 kb on - strand, within Pf6N2E2_6095at 88.126 kb on + strandat 88.233 kb on + strandat 88.234 kb on - strandat 88.285 kb on + strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.286 kb on - strandat 88.291 kb on - strandat 88.291 kb on - strandat 88.311 kb on + strandat 88.312 kb on - strandat 88.405 kb on + strand, within Pf6N2E2_49at 88.406 kb on - strand, within Pf6N2E2_49at 88.406 kb on - strand, within Pf6N2E2_49at 88.491 kb on + strand, within Pf6N2E2_49at 88.529 kb on - strand, within Pf6N2E2_49at 88.537 kb on + strand, within Pf6N2E2_49at 88.574 kb on - strandat 88.624 kb on - strandat 88.777 kb on + strandat 88.800 kb on + strandat 88.800 kb on + strandat 88.800 kb on + strandat 88.801 kb on - strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.876 kb on + strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.877 kb on - strandat 88.930 kb on + strand, within Pf6N2E2_50at 88.931 kb on - strand, within Pf6N2E2_50at 88.931 kb on - strand, within Pf6N2E2_50at 89.131 kb on + strand, within Pf6N2E2_50at 89.131 kb on + strand, within Pf6N2E2_50at 89.132 kb on - strand, within Pf6N2E2_50at 89.530 kb on + strand, within Pf6N2E2_50at 89.531 kb on - strand, within Pf6N2E2_50at 89.758 kb on + strand, within Pf6N2E2_50at 89.759 kb on - strand, within Pf6N2E2_50at 89.786 kb on - strand, within Pf6N2E2_50at 89.786 kb on - strand, within Pf6N2E2_50at 89.786 kb on - strand, within Pf6N2E2_50at 89.786 kb on - strand, within Pf6N2E2_50at 89.852 kb on + strand, within Pf6N2E2_50at 89.852 kb on + strand, within Pf6N2E2_50at 89.853 kb on - strand, within Pf6N2E2_50at 89.853 kb on - strand, within Pf6N2E2_50at 89.872 kb on + strandat 89.872 kb on + strandat 89.873 kb on - strandat 89.903 kb on + strandat 89.985 kb on + strandat 89.986 kb on - strandat 89.998 kb on + strandat 89.999 kb on - strandat 90.065 kb on + strand, within Pf6N2E2_51at 90.065 kb on + strand, within Pf6N2E2_51at 90.065 kb on + strand, within Pf6N2E2_51at 90.065 kb on + strand, within Pf6N2E2_51at 90.065 kb on + strand, within Pf6N2E2_51at 90.065 kb on + strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.066 kb on - strand, within Pf6N2E2_51at 90.068 kb on + strand, within Pf6N2E2_51at 90.068 kb on + strand, within Pf6N2E2_51at 90.068 kb on + strand, within Pf6N2E2_51at 90.068 kb on + strand, within Pf6N2E2_51at 90.069 kb on - strand, within Pf6N2E2_51at 90.069 kb on - strand, within Pf6N2E2_51at 90.070 kb on + strand, within Pf6N2E2_51at 90.070 kb on + strand, within Pf6N2E2_51at 90.070 kb on + strand, within Pf6N2E2_51at 90.070 kb on + strand, within Pf6N2E2_51at 90.071 kb on - strand, within Pf6N2E2_51at 90.178 kb on + strandat 90.178 kb on + strandat 90.310 kb on + strandat 90.310 kb on + strandat 90.310 kb on + strandat 90.311 kb on - strandat 90.332 kb on + strandat 90.332 kb on + strandat 90.333 kb on - strandat 90.532 kb on + strand, within Pf6N2E2_52at 90.532 kb on + strand, within Pf6N2E2_52at 90.574 kb on + strand, within Pf6N2E2_52at 90.574 kb on + strand, within Pf6N2E2_52at 90.575 kb on - strand, within Pf6N2E2_52at 90.586 kb on + strand, within Pf6N2E2_52at 90.587 kb on - strand, within Pf6N2E2_52at 90.595 kb on + strand, within Pf6N2E2_52at 90.595 kb on + strand, within Pf6N2E2_52at 90.598 kb on + strand, within Pf6N2E2_52at 90.599 kb on - strand, within Pf6N2E2_52at 90.599 kb on - strand, within Pf6N2E2_52at 90.599 kb on - strand, within Pf6N2E2_52at 90.613 kb on + strand, within Pf6N2E2_52at 90.614 kb on - strand, within Pf6N2E2_52at 90.614 kb on - strand, within Pf6N2E2_52at 90.748 kb on + strand, within Pf6N2E2_52at 90.748 kb on + strand, within Pf6N2E2_52at 90.749 kb on - strand, within Pf6N2E2_52at 90.772 kb on + strand, within Pf6N2E2_52at 90.773 kb on - strand, within Pf6N2E2_52at 90.773 kb on - strand, within Pf6N2E2_52at 90.773 kb on - strand, within Pf6N2E2_52at 90.853 kb on + strand, within Pf6N2E2_52at 90.853 kb on + strand, within Pf6N2E2_52at 90.853 kb on + strand, within Pf6N2E2_52at 90.854 kb on - strand, within Pf6N2E2_52at 90.854 kb on - strand, within Pf6N2E2_52

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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87,788 + -0.3
87,788 + -2.0
87,806 + +0.7
87,806 + -1.7
87,807 - +2.6
87,906 + -0.1
87,928 + +0.5
87,929 - -0.4
87,975 + -1.7
88,034 - +0.3
88,077 - Pf6N2E2_6095 0.51 +1.5
88,077 - Pf6N2E2_6095 0.51 +0.4
88,093 - Pf6N2E2_6095 0.73 -0.9
88,093 - Pf6N2E2_6095 0.73 +1.0
88,126 + -0.5
88,233 + -0.7
88,234 - -1.2
88,285 + +0.1
88,286 - -0.0
88,286 - -1.3
88,286 - -0.1
88,286 - +0.9
88,291 - -0.2
88,291 - +1.6
88,311 + -0.1
88,312 - -0.0
88,405 + Pf6N2E2_49 0.25 -0.2
88,406 - Pf6N2E2_49 0.25 +0.6
88,406 - Pf6N2E2_49 0.25 +1.1
88,491 + Pf6N2E2_49 0.63 -1.3
88,529 - Pf6N2E2_49 0.79 +0.7
88,537 + Pf6N2E2_49 0.83 -1.1
88,574 - -1.3
88,624 - +0.0
88,777 + -0.8
88,800 + -0.3
88,800 + -0.6
88,800 + -0.4
88,801 - -1.2
88,876 + -1.0
88,876 + -0.2
88,876 + -0.4
88,876 + -0.5
88,876 + -0.4
88,876 + +0.5
88,876 + -1.7
88,876 + +0.9
88,876 + -0.3
88,876 + -0.1
88,877 - +0.4
88,877 - -0.4
88,877 - -0.6
88,877 - +0.7
88,877 - -0.4
88,930 + Pf6N2E2_50 0.12 +0.0
88,931 - Pf6N2E2_50 0.12 -1.0
88,931 - Pf6N2E2_50 0.12 -1.1
89,131 + Pf6N2E2_50 0.29 -2.5
89,131 + Pf6N2E2_50 0.29 -0.8
89,132 - Pf6N2E2_50 0.29 -1.5
89,530 + Pf6N2E2_50 0.62 -1.1
89,531 - Pf6N2E2_50 0.62 -1.1
89,758 + Pf6N2E2_50 0.81 +0.2
89,759 - Pf6N2E2_50 0.81 +0.5
89,786 - Pf6N2E2_50 0.83 +0.0
89,786 - Pf6N2E2_50 0.83 +0.6
89,786 - Pf6N2E2_50 0.83 -1.3
89,786 - Pf6N2E2_50 0.83 +1.2
89,852 + Pf6N2E2_50 0.89 +1.4
89,852 + Pf6N2E2_50 0.89 -1.3
89,853 - Pf6N2E2_50 0.89 +0.1
89,853 - Pf6N2E2_50 0.89 -2.8
89,872 + -0.7
89,872 + -1.1
89,873 - +0.2
89,903 + -0.3
89,985 + -1.5
89,986 - -0.2
89,998 + +0.2
89,999 - -1.4
90,065 + Pf6N2E2_51 0.33 +1.0
90,065 + Pf6N2E2_51 0.33 -0.5
90,065 + Pf6N2E2_51 0.33 -1.3
90,065 + Pf6N2E2_51 0.33 -0.5
90,065 + Pf6N2E2_51 0.33 -1.0
90,065 + Pf6N2E2_51 0.33 +0.4
90,066 - Pf6N2E2_51 0.34 -2.1
90,066 - Pf6N2E2_51 0.34 -0.5
90,066 - Pf6N2E2_51 0.34 +0.0
90,066 - Pf6N2E2_51 0.34 +0.0
90,066 - Pf6N2E2_51 0.34 +0.2
90,066 - Pf6N2E2_51 0.34 +0.4
90,066 - Pf6N2E2_51 0.34 -0.8
90,066 - Pf6N2E2_51 0.34 -2.4
90,066 - Pf6N2E2_51 0.34 -0.2
90,066 - Pf6N2E2_51 0.34 -0.1
90,068 + Pf6N2E2_51 0.35 -0.9
90,068 + Pf6N2E2_51 0.35 +0.3
90,068 + Pf6N2E2_51 0.35 -0.1
90,068 + Pf6N2E2_51 0.35 -0.0
90,069 - Pf6N2E2_51 0.35 +0.5
90,069 - Pf6N2E2_51 0.35 -0.5
90,070 + Pf6N2E2_51 0.36 -1.0
90,070 + Pf6N2E2_51 0.36 -0.3
90,070 + Pf6N2E2_51 0.36 -1.7
90,070 + Pf6N2E2_51 0.36 -0.2
90,071 - Pf6N2E2_51 0.36 +0.3
90,178 + +0.5
90,178 + -1.2
90,310 + -0.2
90,310 + +0.2
90,310 + +0.5
90,311 - +1.0
90,332 + +0.4
90,332 + -0.3
90,333 - +0.3
90,532 + Pf6N2E2_52 0.11 -0.5
90,532 + Pf6N2E2_52 0.11 -1.8
90,574 + Pf6N2E2_52 0.13 +0.2
90,574 + Pf6N2E2_52 0.13 +0.7
90,575 - Pf6N2E2_52 0.13 +0.7
90,586 + Pf6N2E2_52 0.13 -1.0
90,587 - Pf6N2E2_52 0.13 -2.1
90,595 + Pf6N2E2_52 0.14 -1.0
90,595 + Pf6N2E2_52 0.14 +0.5
90,598 + Pf6N2E2_52 0.14 +0.8
90,599 - Pf6N2E2_52 0.14 +0.3
90,599 - Pf6N2E2_52 0.14 -0.1
90,599 - Pf6N2E2_52 0.14 -0.1
90,613 + Pf6N2E2_52 0.15 +0.0
90,614 - Pf6N2E2_52 0.15 -0.5
90,614 - Pf6N2E2_52 0.15 +0.0
90,748 + Pf6N2E2_52 0.21 +0.8
90,748 + Pf6N2E2_52 0.21 +1.4
90,749 - Pf6N2E2_52 0.21 +0.8
90,772 + Pf6N2E2_52 0.23 -0.6
90,773 - Pf6N2E2_52 0.23 -0.7
90,773 - Pf6N2E2_52 0.23 -0.1
90,773 - Pf6N2E2_52 0.23 -0.7
90,853 + Pf6N2E2_52 0.27 -0.2
90,853 + Pf6N2E2_52 0.27 -1.1
90,853 + Pf6N2E2_52 0.27 -2.3
90,854 - Pf6N2E2_52 0.27 -0.4
90,854 - Pf6N2E2_52 0.27 -0.7

Or see this region's nucleotide sequence