Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4609

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4607 and Pf6N2E2_4608 are separated by 85 nucleotidesPf6N2E2_4608 and Pf6N2E2_4609 overlap by 1 nucleotidesPf6N2E2_4609 and Pf6N2E2_4610 are separated by 293 nucleotides Pf6N2E2_4607 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 5,332,816 to 5,333,322 _4607 Pf6N2E2_4608 - Putative Holliday junction resolvase YggF, at 5,333,408 to 5,333,845 _4608 Pf6N2E2_4609 - UPF0301 protein YqgE, at 5,333,845 to 5,334,414 _4609 Pf6N2E2_4610 - Mobile element protein, at 5,334,708 to 5,335,877 _4610 Position (kb) 5333 5334 5335Strain fitness (log2 ratio) -3 -2 -1 0 1at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.036 kb on - strand, within Pf6N2E2_4607at 5333.136 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.232 kb on - strand, within Pf6N2E2_4607at 5333.368 kb on - strandat 5333.374 kb on - strandat 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.324 kb on - strand, within Pf6N2E2_4609at 5334.393 kb on - strandat 5334.393 kb on - strandat 5334.393 kb on - strandat 5334.422 kb on - strandat 5334.600 kb on - strandat 5334.615 kb on - strandat 5334.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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5,333,036 - Pf6N2E2_4607 0.43 -3.2
5,333,036 - Pf6N2E2_4607 0.43 -1.3
5,333,036 - Pf6N2E2_4607 0.43 -1.2
5,333,036 - Pf6N2E2_4607 0.43 -1.8
5,333,036 - Pf6N2E2_4607 0.43 +0.5
5,333,136 - Pf6N2E2_4607 0.63 -1.1
5,333,232 - Pf6N2E2_4607 0.82 -0.3
5,333,232 - Pf6N2E2_4607 0.82 -1.6
5,333,232 - Pf6N2E2_4607 0.82 -1.2
5,333,368 - -1.3
5,333,374 - -1.3
5,334,324 - Pf6N2E2_4609 0.84 -0.6
5,334,324 - Pf6N2E2_4609 0.84 -0.9
5,334,324 - Pf6N2E2_4609 0.84 -1.3
5,334,324 - Pf6N2E2_4609 0.84 +0.1
5,334,324 - Pf6N2E2_4609 0.84 -0.4
5,334,324 - Pf6N2E2_4609 0.84 -1.9
5,334,324 - Pf6N2E2_4609 0.84 -0.2
5,334,324 - Pf6N2E2_4609 0.84 -1.4
5,334,393 - -0.4
5,334,393 - -1.4
5,334,393 - +1.4
5,334,422 - +0.1
5,334,600 - -0.4
5,334,615 - +1.0
5,334,615 - +0.3

Or see this region's nucleotide sequence