Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4587

Experiment: Lomefloxacin 0.0002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4586 and Pf6N2E2_4587 are separated by 185 nucleotidesPf6N2E2_4587 and Pf6N2E2_4588 are separated by 73 nucleotidesPf6N2E2_4588 and Pf6N2E2_4589 are separated by 79 nucleotidesPf6N2E2_4589 and Pf6N2E2_4590 are separated by 54 nucleotides Pf6N2E2_4586 - RNA polymerase sigma factor RpoH, at 5,316,529 to 5,317,383 _4586 Pf6N2E2_4587 - Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-), at 5,317,569 to 5,318,291 _4587 Pf6N2E2_4588 - COG2363, at 5,318,365 to 5,318,745 _4588 Pf6N2E2_4589 - Sulfur carrier protein ThiS, at 5,318,825 to 5,319,043 _4589 Pf6N2E2_4590 - Thiazole biosynthesis protein ThiG, at 5,319,098 to 5,319,892 _4590 Position (kb) 5317 5318 5319Strain fitness (log2 ratio) -2 -1 0 1at 5317.400 kb on + strandat 5317.557 kb on + strandat 5317.558 kb on - strandat 5317.615 kb on + strandat 5317.616 kb on - strandat 5317.675 kb on + strand, within Pf6N2E2_4587at 5317.675 kb on + strand, within Pf6N2E2_4587at 5317.676 kb on - strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.837 kb on + strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5317.838 kb on - strand, within Pf6N2E2_4587at 5318.280 kb on + strandat 5318.281 kb on - strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.291 kb on + strandat 5318.292 kb on - strandat 5318.327 kb on + strandat 5318.328 kb on - strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.329 kb on + strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.330 kb on - strandat 5318.373 kb on + strandat 5318.373 kb on + strandat 5318.374 kb on - strandat 5318.374 kb on - strandat 5318.467 kb on + strand, within Pf6N2E2_4588at 5318.467 kb on + strand, within Pf6N2E2_4588at 5318.468 kb on - strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.497 kb on + strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.498 kb on - strand, within Pf6N2E2_4588at 5318.512 kb on - strand, within Pf6N2E2_4588at 5318.512 kb on - strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.603 kb on + strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.604 kb on - strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.623 kb on + strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.624 kb on - strand, within Pf6N2E2_4588at 5318.759 kb on + strandat 5318.759 kb on + strandat 5318.760 kb on - strandat 5318.760 kb on - strandat 5318.760 kb on - strandat 5318.805 kb on + strandat 5318.805 kb on + strandat 5319.142 kb on + strandat 5319.142 kb on + strandat 5319.143 kb on - strandat 5319.180 kb on - strand, within Pf6N2E2_4590

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM
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5,317,400 + -1.8
5,317,557 + -0.7
5,317,558 - +0.9
5,317,615 + -1.0
5,317,616 - -0.0
5,317,675 + Pf6N2E2_4587 0.15 -0.2
5,317,675 + Pf6N2E2_4587 0.15 +0.7
5,317,676 - Pf6N2E2_4587 0.15 +0.2
5,317,837 + Pf6N2E2_4587 0.37 -1.1
5,317,837 + Pf6N2E2_4587 0.37 -1.0
5,317,837 + Pf6N2E2_4587 0.37 -1.0
5,317,837 + Pf6N2E2_4587 0.37 +0.7
5,317,838 - Pf6N2E2_4587 0.37 +1.0
5,317,838 - Pf6N2E2_4587 0.37 +0.1
5,317,838 - Pf6N2E2_4587 0.37 -1.7
5,317,838 - Pf6N2E2_4587 0.37 +0.2
5,318,280 + -0.5
5,318,281 - -0.8
5,318,291 + -0.4
5,318,291 + -1.1
5,318,291 + -0.7
5,318,291 + -0.7
5,318,291 + +0.4
5,318,292 - +0.0
5,318,327 + +0.2
5,318,328 - +0.0
5,318,329 + +0.5
5,318,329 + +0.4
5,318,329 + -0.7
5,318,329 + +0.7
5,318,329 + -0.3
5,318,329 + -0.2
5,318,329 + -0.3
5,318,329 + +0.2
5,318,329 + +0.3
5,318,329 + -0.5
5,318,329 + +0.5
5,318,329 + -0.8
5,318,329 + +0.8
5,318,330 - +0.6
5,318,330 - -0.9
5,318,330 - +1.1
5,318,330 - +0.8
5,318,330 - +1.0
5,318,330 - +1.4
5,318,330 - -0.4
5,318,330 - -0.9
5,318,330 - +0.4
5,318,330 - +0.4
5,318,373 + -0.7
5,318,373 + +1.0
5,318,374 - +0.1
5,318,374 - -1.4
5,318,467 + Pf6N2E2_4588 0.27 +0.4
5,318,467 + Pf6N2E2_4588 0.27 +0.3
5,318,468 - Pf6N2E2_4588 0.27 -0.4
5,318,497 + Pf6N2E2_4588 0.35 +0.5
5,318,497 + Pf6N2E2_4588 0.35 -1.0
5,318,497 + Pf6N2E2_4588 0.35 +0.2
5,318,497 + Pf6N2E2_4588 0.35 +0.2
5,318,497 + Pf6N2E2_4588 0.35 +1.0
5,318,498 - Pf6N2E2_4588 0.35 -0.4
5,318,498 - Pf6N2E2_4588 0.35 +0.1
5,318,498 - Pf6N2E2_4588 0.35 -0.4
5,318,498 - Pf6N2E2_4588 0.35 -0.6
5,318,498 - Pf6N2E2_4588 0.35 -0.2
5,318,512 - Pf6N2E2_4588 0.39 -0.7
5,318,512 - Pf6N2E2_4588 0.39 +0.8
5,318,603 + Pf6N2E2_4588 0.62 -0.8
5,318,603 + Pf6N2E2_4588 0.62 +0.9
5,318,603 + Pf6N2E2_4588 0.62 -0.2
5,318,603 + Pf6N2E2_4588 0.62 -1.1
5,318,603 + Pf6N2E2_4588 0.62 -0.3
5,318,603 + Pf6N2E2_4588 0.62 +0.0
5,318,603 + Pf6N2E2_4588 0.62 +0.7
5,318,603 + Pf6N2E2_4588 0.62 -1.5
5,318,603 + Pf6N2E2_4588 0.62 -0.7
5,318,603 + Pf6N2E2_4588 0.62 +0.1
5,318,603 + Pf6N2E2_4588 0.62 -1.0
5,318,604 - Pf6N2E2_4588 0.63 +0.9
5,318,604 - Pf6N2E2_4588 0.63 -0.4
5,318,604 - Pf6N2E2_4588 0.63 +0.6
5,318,604 - Pf6N2E2_4588 0.63 -0.7
5,318,604 - Pf6N2E2_4588 0.63 -0.2
5,318,604 - Pf6N2E2_4588 0.63 +0.6
5,318,604 - Pf6N2E2_4588 0.63 +1.0
5,318,604 - Pf6N2E2_4588 0.63 -0.7
5,318,604 - Pf6N2E2_4588 0.63 +0.8
5,318,604 - Pf6N2E2_4588 0.63 -0.6
5,318,604 - Pf6N2E2_4588 0.63 +0.2
5,318,604 - Pf6N2E2_4588 0.63 +0.3
5,318,604 - Pf6N2E2_4588 0.63 +1.0
5,318,623 + Pf6N2E2_4588 0.68 +0.1
5,318,623 + Pf6N2E2_4588 0.68 -1.7
5,318,623 + Pf6N2E2_4588 0.68 -0.3
5,318,624 - Pf6N2E2_4588 0.68 +0.1
5,318,624 - Pf6N2E2_4588 0.68 -0.1
5,318,624 - Pf6N2E2_4588 0.68 -0.8
5,318,759 + +0.0
5,318,759 + -2.1
5,318,760 - +0.0
5,318,760 - -2.4
5,318,760 - +0.1
5,318,805 + +0.2
5,318,805 + +0.9
5,319,142 + -0.4
5,319,142 + -0.2
5,319,143 - +0.1
5,319,180 - Pf6N2E2_4590 0.10 +1.1

Or see this region's nucleotide sequence