Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3600 and Pf6N2E2_3601 are separated by 291 nucleotides Pf6N2E2_3601 and Pf6N2E2_3602 are separated by 117 nucleotides Pf6N2E2_3602 and Pf6N2E2_3603 are separated by 18 nucleotides
Pf6N2E2_3600 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 4,189,975 to 4,192,275
_3600
Pf6N2E2_3601 - Replicative DNA helicase (EC 3.6.1.-), at 4,192,567 to 4,193,964
_3601
Pf6N2E2_3602 - LSU ribosomal protein L9p, at 4,194,082 to 4,194,528
_3602
Pf6N2E2_3603 - FIG003573: hypothetical protein, at 4,194,547 to 4,195,437
_3603
Position (kb)
4192
4193
4194 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 4191.590 kb on + strand, within Pf6N2E2_3600 at 4191.713 kb on + strand, within Pf6N2E2_3600 at 4191.773 kb on + strand, within Pf6N2E2_3600 at 4191.774 kb on - strand, within Pf6N2E2_3600 at 4191.779 kb on + strand, within Pf6N2E2_3600 at 4191.780 kb on - strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.862 kb on - strand, within Pf6N2E2_3600 at 4191.862 kb on - strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.864 kb on - strand, within Pf6N2E2_3600 at 4191.914 kb on + strand, within Pf6N2E2_3600 at 4191.950 kb on + strand, within Pf6N2E2_3600 at 4192.130 kb on + strand at 4192.130 kb on + strand at 4192.131 kb on - strand at 4192.131 kb on - strand at 4192.238 kb on + strand at 4192.238 kb on + strand at 4192.238 kb on + strand at 4192.247 kb on + strand at 4192.290 kb on + strand at 4192.290 kb on + strand at 4192.291 kb on - strand at 4192.318 kb on + strand at 4192.320 kb on + strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.397 kb on + strand at 4192.397 kb on + strand at 4192.398 kb on - strand at 4192.468 kb on + strand at 4192.469 kb on - strand at 4192.548 kb on - strand at 4192.568 kb on + strand at 4192.569 kb on - strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.590 kb on - strand at 4192.590 kb on - strand at 4194.083 kb on + strand at 4194.158 kb on - strand, within Pf6N2E2_3602 at 4194.444 kb on - strand, within Pf6N2E2_3602 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.680 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 4,191,590 + Pf6N2E2_3600 0.70 -0.5 4,191,713 + Pf6N2E2_3600 0.76 +1.8 4,191,773 + Pf6N2E2_3600 0.78 +0.4 4,191,774 - Pf6N2E2_3600 0.78 +2.8 4,191,779 + Pf6N2E2_3600 0.78 +2.0 4,191,780 - Pf6N2E2_3600 0.78 +0.0 4,191,839 + Pf6N2E2_3600 0.81 +1.3 4,191,839 + Pf6N2E2_3600 0.81 +0.6 4,191,839 + Pf6N2E2_3600 0.81 +1.2 4,191,839 + Pf6N2E2_3600 0.81 +2.3 4,191,840 - Pf6N2E2_3600 0.81 +1.5 4,191,840 - Pf6N2E2_3600 0.81 +0.1 4,191,840 - Pf6N2E2_3600 0.81 +0.7 4,191,840 - Pf6N2E2_3600 0.81 +0.6 4,191,862 - Pf6N2E2_3600 0.82 +2.0 4,191,862 - Pf6N2E2_3600 0.82 +0.5 4,191,863 + Pf6N2E2_3600 0.82 +0.1 4,191,863 + Pf6N2E2_3600 0.82 +0.3 4,191,863 + Pf6N2E2_3600 0.82 +0.8 4,191,864 - Pf6N2E2_3600 0.82 +0.3 4,191,914 + Pf6N2E2_3600 0.84 +1.5 4,191,950 + Pf6N2E2_3600 0.86 +0.3 4,192,130 + +0.2 4,192,130 + +1.2 4,192,131 - +0.7 4,192,131 - +1.3 4,192,238 + -0.2 4,192,238 + +2.4 4,192,238 + -0.0 4,192,247 + +0.9 4,192,290 + +0.2 4,192,290 + +0.1 4,192,291 - +1.3 4,192,318 + +1.1 4,192,320 + +1.0 4,192,321 - -0.2 4,192,321 - +0.0 4,192,321 - -0.1 4,192,321 - -0.4 4,192,321 - -0.9 4,192,321 - -0.3 4,192,321 - -1.1 4,192,397 + +0.7 4,192,397 + +1.0 4,192,398 - +0.1 4,192,468 + -0.8 4,192,469 - -0.5 4,192,548 - +1.5 4,192,568 + -0.2 4,192,569 - -1.0 4,192,589 + -0.8 4,192,589 + +0.1 4,192,589 + -0.0 4,192,589 + -0.4 4,192,590 - -0.0 4,192,590 - +0.2 4,194,083 + +4.8 4,194,158 - Pf6N2E2_3602 0.17 +4.6 4,194,444 - Pf6N2E2_3602 0.81 +4.4 4,194,678 - Pf6N2E2_3603 0.15 +4.7 4,194,678 - Pf6N2E2_3603 0.15 +4.3 4,194,678 - Pf6N2E2_3603 0.15 +3.5 4,194,678 - Pf6N2E2_3603 0.15 +4.9 4,194,678 - Pf6N2E2_3603 0.15 +3.7 4,194,678 - Pf6N2E2_3603 0.15 +3.7 4,194,678 - Pf6N2E2_3603 0.15 +4.8 4,194,678 - Pf6N2E2_3603 0.15 +4.9 4,194,678 - Pf6N2E2_3603 0.15 +4.2 4,194,678 - Pf6N2E2_3603 0.15 +4.5 4,194,678 - Pf6N2E2_3603 0.15 +3.7 4,194,678 - Pf6N2E2_3603 0.15 +4.1 4,194,678 - Pf6N2E2_3603 0.15 -0.8 4,194,678 - Pf6N2E2_3603 0.15 +4.0 4,194,680 - Pf6N2E2_3603 0.15 +5.0 4,194,897 - Pf6N2E2_3603 0.39 +3.5 4,194,897 - Pf6N2E2_3603 0.39 +4.6 4,194,897 - Pf6N2E2_3603 0.39 +3.7
Or see this region's nucleotide sequence