Experiment: Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1026 and Pf6N2E2_1027 overlap by 4 nucleotides Pf6N2E2_1027 and Pf6N2E2_1028 are separated by 195 nucleotides Pf6N2E2_1028 and Pf6N2E2_1029 are separated by 126 nucleotides
Pf6N2E2_1026 - Rhodanese-related sulfurtransferase, at 1,199,480 to 1,201,063
_1026
Pf6N2E2_1027 - Cysteine dioxygenase (EC 1.13.11.20), at 1,201,060 to 1,201,695
_1027
Pf6N2E2_1028 - Transcriptional regulator, LysR family, at 1,201,891 to 1,202,796
_1028
Pf6N2E2_1029 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 1,202,923 to 1,203,717
_1029
Position (kb)
1201
1202
1203 Strain fitness (log2 ratio)
-2
-1
0
1 at 1200.903 kb on + strand, within Pf6N2E2_1026 at 1201.052 kb on + strand at 1201.053 kb on - strand at 1201.064 kb on - strand at 1201.157 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.482 kb on - strand at 1201.482 kb on - strand, within Pf6N2E2_1027 at 1201.832 kb on + strand at 1201.864 kb on - strand at 1201.864 kb on - strand at 1201.864 kb on - strand at 1202.449 kb on + strand, within Pf6N2E2_1028 at 1202.449 kb on + strand, within Pf6N2E2_1028 at 1202.449 kb on + strand, within Pf6N2E2_1028 at 1202.704 kb on + strand, within Pf6N2E2_1028 at 1202.881 kb on - strand at 1202.899 kb on + strand at 1202.946 kb on + strand at 1203.058 kb on + strand, within Pf6N2E2_1029 at 1203.058 kb on + strand, within Pf6N2E2_1029 at 1203.058 kb on + strand, within Pf6N2E2_1029 at 1203.059 kb on - strand, within Pf6N2E2_1029 at 1203.059 kb on - strand, within Pf6N2E2_1029 at 1203.059 kb on - strand, within Pf6N2E2_1029 at 1203.193 kb on - strand, within Pf6N2E2_1029 at 1203.220 kb on + strand, within Pf6N2E2_1029 at 1203.446 kb on + strand, within Pf6N2E2_1029 at 1203.446 kb on + strand, within Pf6N2E2_1029 at 1203.447 kb on - strand, within Pf6N2E2_1029 at 1203.746 kb on - strand at 1203.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0002 mM remove 1,200,903 + Pf6N2E2_1026 0.90 -0.3 1,201,052 + -0.3 1,201,053 - +0.8 1,201,064 - +0.5 1,201,157 + Pf6N2E2_1027 0.15 +0.6 1,201,481 + Pf6N2E2_1027 0.66 -0.3 1,201,481 + Pf6N2E2_1027 0.66 -0.2 1,201,481 + Pf6N2E2_1027 0.66 -2.0 1,201,482 - +0.2 1,201,482 - Pf6N2E2_1027 0.66 +0.5 1,201,832 + -1.2 1,201,864 - -1.0 1,201,864 - -0.0 1,201,864 - -1.0 1,202,449 + Pf6N2E2_1028 0.62 -0.4 1,202,449 + Pf6N2E2_1028 0.62 -1.4 1,202,449 + Pf6N2E2_1028 0.62 -0.6 1,202,704 + Pf6N2E2_1028 0.90 -0.9 1,202,881 - -0.2 1,202,899 + +0.1 1,202,946 + -0.9 1,203,058 + Pf6N2E2_1029 0.17 +0.3 1,203,058 + Pf6N2E2_1029 0.17 +1.2 1,203,058 + Pf6N2E2_1029 0.17 -0.3 1,203,059 - Pf6N2E2_1029 0.17 -0.2 1,203,059 - Pf6N2E2_1029 0.17 -0.6 1,203,059 - Pf6N2E2_1029 0.17 -0.8 1,203,193 - Pf6N2E2_1029 0.34 +0.6 1,203,220 + Pf6N2E2_1029 0.37 -0.5 1,203,446 + Pf6N2E2_1029 0.66 -1.3 1,203,446 + Pf6N2E2_1029 0.66 +0.5 1,203,447 - Pf6N2E2_1029 0.66 +0.1 1,203,746 - -2.4 1,203,760 + -1.0
Or see this region's nucleotide sequence