Strain Fitness in Pantoea sp. MT58 around IAI47_19015

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
33,339	+		IAI47_19005	0.87	+0.4
33,339	+		IAI47_19005	0.87	-0.6
33,339	+		IAI47_19005	0.87	-0.2
33,340	-		IAI47_19005	0.87	-0.2
33,340	-		IAI47_19005	0.87	+0.7
33,347	+		IAI47_19005	0.88	+1.1
33,435	+				-0.8
33,436	-				+0.3
33,441	+				+0.4
33,441	+				-1.1
33,442	-				+1.1
33,444	+				+0.9
33,445	-				-1.3
33,445	-				+0.1
33,481	+				-0.4
33,481	+				-0.4
33,481	+				-0.9
33,482	-				+1.7
33,482	-				-0.2
33,482	-				+0.5
33,482	-				+0.7
33,482	-				-1.8
33,525	+				-0.1
33,525	+				+0.0
33,525	+				-0.9
33,526	-				+1.0
33,526	-				+0.5
33,526	-				+2.5
33,526	-				-1.1
33,598	+		IAI47_19010	0.16	-0.7
33,599	-		IAI47_19010	0.16	+0.2
33,633	-		IAI47_19010	0.21	-0.7
33,709	-		IAI47_19010	0.32	+1.6
33,740	+		IAI47_19010	0.36	-0.7
33,741	-		IAI47_19010	0.36	+1.5
33,741	-		IAI47_19010	0.36	-0.2
33,798	-		IAI47_19010	0.44	+1.5
33,798	-		IAI47_19010	0.44	+0.7
33,798	-		IAI47_19010	0.44	+0.6
33,798	-		IAI47_19010	0.44	-0.2
33,856	+		IAI47_19010	0.52	+1.5
33,857	-		IAI47_19010	0.52	-0.0
33,857	-		IAI47_19010	0.52	-2.1
33,935	+		IAI47_19010	0.63	-0.5
33,935	+		IAI47_19010	0.63	+0.5
33,936	-		IAI47_19010	0.63	+1.1
33,936	-		IAI47_19010	0.63	+0.8
33,936	-		IAI47_19010	0.63	+0.5
33,936	-		IAI47_19010	0.63	-1.6
33,936	-		IAI47_19010	0.63	+2.9
33,936	-		IAI47_19010	0.63	+0.6
33,936	-		IAI47_19010	0.63	+0.2
33,936	-		IAI47_19010	0.63	+1.0
33,936	-		IAI47_19010	0.63	+0.9
33,948	-		IAI47_19010	0.64	-1.6
33,989	-		IAI47_19010	0.70	+1.0
33,989	-		IAI47_19010	0.70	+0.8
34,065	+		IAI47_19010	0.81	-0.1
34,065	+		IAI47_19010	0.81	-0.2
34,065	+		IAI47_19010	0.81	-0.4
34,065	+		IAI47_19010	0.81	+1.3
34,065	+		IAI47_19010	0.81	+0.2
34,065	+		IAI47_19010	0.81	-1.1
34,065	+		IAI47_19010	0.81	-1.8
34,065	+		IAI47_19010	0.81	-0.8
34,065	+		IAI47_19010	0.81	-1.6
34,065	+		IAI47_19010	0.81	+0.2
34,066	-		IAI47_19010	0.81	+0.4
34,066	-		IAI47_19010	0.81	+0.7
34,066	-		IAI47_19010	0.81	-0.5
34,066	-		IAI47_19010	0.81	-0.8
34,066	-		IAI47_19010	0.81	-0.1
34,066	-		IAI47_19010	0.81	-0.5
34,066	-		IAI47_19010	0.81	+0.1
34,185	+				+2.0
34,185	+				-1.3
34,186	-				+0.4
34,186	-				+0.5
34,208	+				+1.9
34,208	+				-0.5
34,208	+				-0.3
34,208	+				-0.3
34,208	+				-1.3
34,208	+				+1.7
34,208	+				-0.3
34,208	+				+0.8
34,209	-				+1.2
34,209	-				+0.6
34,209	-				+0.7
34,219	+				-0.0
34,240	+				-1.4
34,240	+				+0.0
34,240	+				-0.3
34,240	+				+0.1
34,240	+				-1.3
34,240	+				+0.0
34,240	+				+0.6
34,240	+				+0.4
34,241	-				-0.1
34,241	-				+0.3
34,241	-				+0.0
34,241	-				-1.2
34,241	-				+0.5
34,254	+				+0.2
34,255	-				-0.6
34,256	+				-2.1
34,256	+				-1.4
34,256	+				+0.3
34,256	+				+0.0
34,262	+				-0.1
34,263	-				+0.4
34,263	-				+0.2
34,300	-				-0.1
34,304	+				+0.3
34,304	+				+0.7
34,304	+				+0.6
34,304	+				+1.4
34,304	+				+0.2
34,305	-				-0.2
34,305	-				-1.3
34,305	-				+1.3
34,439	+		IAI47_19015	0.15	+1.8
34,439	+		IAI47_19015	0.15	-0.1
34,439	+		IAI47_19015	0.15	+1.7
34,439	+		IAI47_19015	0.15	+0.5
34,440	-		IAI47_19015	0.15	+0.1
34,440	-		IAI47_19015	0.15	+0.6
34,440	-		IAI47_19015	0.15	-0.6
34,440	-		IAI47_19015	0.15	+0.2
34,440	-		IAI47_19015	0.15	+0.6
34,442	+		IAI47_19015	0.15	-0.5
34,443	-		IAI47_19015	0.16	+0.9
34,443	-		IAI47_19015	0.16	+0.3
34,443	-		IAI47_19015	0.16	+1.9
34,445	+		IAI47_19015	0.16	+0.5
34,445	+		IAI47_19015	0.16	+1.0
34,446	-		IAI47_19015	0.16	+0.7
34,446	-		IAI47_19015	0.16	+0.7
34,446	-		IAI47_19015	0.16	-1.0
34,446	-		IAI47_19015	0.16	+3.8
34,503	+		IAI47_19015	0.22	+1.5
34,504	-		IAI47_19015	0.22	+0.5
34,536	-		IAI47_19015	0.26	+0.4
34,649	+		IAI47_19015	0.39	+2.1
34,659	+		IAI47_19015	0.40	+0.3
34,678	-		IAI47_19015	0.42	-1.0
34,722	+		IAI47_19015	0.47	-0.1
34,722	+		IAI47_19015	0.47	-0.7
34,735	+		IAI47_19015	0.49	+1.3
34,736	-		IAI47_19015	0.49	-0.8
34,736	-		IAI47_19015	0.49	-0.1
34,736	-		IAI47_19015	0.49	+0.4
34,736	-		IAI47_19015	0.49	-0.4
34,764	-		IAI47_19015	0.52	+1.3
34,764	-		IAI47_19015	0.52	+0.2
34,764	-		IAI47_19015	0.52	+0.7
34,822	-		IAI47_19015	0.58	-0.3
34,822	-		IAI47_19015	0.58	-1.0
34,879	+		IAI47_19015	0.65	-0.9
34,879	+		IAI47_19015	0.65	+0.3
34,879	+		IAI47_19015	0.65	+0.4
34,879	+		IAI47_19015	0.65	-0.6
34,879	+		IAI47_19015	0.65	-1.0
34,879	+		IAI47_19015	0.65	-0.4
34,880	-		IAI47_19015	0.65	-0.8
34,880	-		IAI47_19015	0.65	-0.6
34,880	-		IAI47_19015	0.65	+1.5
34,880	-		IAI47_19015	0.65	+1.7
34,880	-		IAI47_19015	0.65	-0.5
34,911	+		IAI47_19015	0.68	-0.5
34,941	-		IAI47_19015	0.72	+0.7
34,941	-		IAI47_19015	0.72	+1.1
34,941	-		IAI47_19015	0.72	-0.8
35,055	+		IAI47_19015	0.85	-1.5
35,055	+		IAI47_19015	0.85	-0.4
35,055	+		IAI47_19015	0.85	+1.5
35,056	-		IAI47_19015	0.85	-0.1
35,056	-		IAI47_19015	0.85	-0.3
35,056	-		IAI47_19015	0.85	+0.1
35,056	-		IAI47_19015	0.85	+0.2
35,078	+		IAI47_19015	0.87	+1.7
35,078	+		IAI47_19015	0.87	-0.2
35,078	+		IAI47_19015	0.87	+1.9
35,078	+		IAI47_19015	0.87	-0.6
35,078	+		IAI47_19015	0.87	-0.5
35,079	-		IAI47_19015	0.87	+1.2
35,079	-		IAI47_19015	0.87	+0.8
35,079	-		IAI47_19015	0.87	-0.1
35,079	-		IAI47_19015	0.87	-0.0
35,081	+		IAI47_19015	0.88	-0.5
35,081	+		IAI47_19015	0.88	-0.2
35,082	-		IAI47_19015	0.88	-0.1
35,082	-		IAI47_19015	0.88	+0.0
35,118	+				+0.7
35,118	+				+0.9
35,118	+				-1.3
35,119	-				-0.8
35,119	-				+0.2
35,119	-				+0.5
35,119	-				-0.5
35,119	-				-0.1
35,119	-				-1.5
35,124	+				+1.1
35,124	+				+0.2
35,167	+				+1.5
35,168	-				+0.7
35,210	+				-0.7
35,211	-				+1.5
35,211	-				+2.5
35,222	+				+0.4
35,222	+				+0.8
35,222	+				-0.1
35,223	-				+0.8
35,223	-				-1.0
35,289	+		IAI47_19020	0.20	-0.1
35,289	+		IAI47_19020	0.20	+1.1
35,289	+		IAI47_19020	0.20	+0.1
35,290	-		IAI47_19020	0.20	-1.1
35,290	-		IAI47_19020	0.20	-1.5
35,290	-		IAI47_19020	0.20	+1.8
35,290	-		IAI47_19020	0.20	-0.4
35,290	-		IAI47_19020	0.20	+1.7
35,290	-		IAI47_19020	0.20	-1.6
35,290	-		IAI47_19020	0.20	-0.4
35,290	-		IAI47_19020	0.20	-0.0
35,290	-		IAI47_19020	0.20	+0.6
35,355	+		IAI47_19020	0.37	-1.0
35,355	+		IAI47_19020	0.37	-1.3
35,356	-		IAI47_19020	0.37	-0.5
35,356	-		IAI47_19020	0.37	+2.8
35,379	+		IAI47_19020	0.43	-0.8
35,380	-		IAI47_19020	0.43	-0.6
35,380	-		IAI47_19020	0.43	-0.6
35,380	-		IAI47_19020	0.43	-1.8
35,421	+		IAI47_19020	0.53	+0.1
35,421	+		IAI47_19020	0.53	-1.0
35,422	-		IAI47_19020	0.53	-0.3
35,448	+		IAI47_19020	0.60	-1.8
35,449	-		IAI47_19020	0.60	-0.5
35,449	-		IAI47_19020	0.60	-0.8
35,449	-		IAI47_19020	0.60	+0.0
35,449	-		IAI47_19020	0.60	-1.0
35,449	-		IAI47_19020	0.60	+0.3
35,535	+		IAI47_19020	0.82	-0.9
35,535	+		IAI47_19020	0.82	+1.0
35,535	+		IAI47_19020	0.82	+0.3
35,536	-		IAI47_19020	0.82	-0.4
35,536	-		IAI47_19020	0.82	-0.5
35,536	-		IAI47_19020	0.82	-0.4
35,622	-				-0.5
35,622	-				+1.0
35,625	-				+2.3
35,625	-				+2.1
35,636	+				-1.2
35,636	+				+0.4
35,636	+				-0.8
35,637	-				-0.7
35,637	-				+1.2
35,642	+				+0.4
35,681	+				-0.7
35,681	+				-1.1
35,681	+				+1.6
35,681	+				-0.1
35,682	-				+0.1
35,682	-				+1.2
35,682	-				-0.6
35,682	-				-0.3
35,682	-				-0.2
35,682	-				-0.2
35,682	-				-0.4
35,682	-				+0.3
35,682	-				+0.7
35,689	+				-0.5
35,691	+				-0.9
35,702	+				+0.2
35,703	-				+0.2
35,703	-				+0.7
35,705	+				+0.4
35,705	+				-1.8
35,705	+				-1.0
35,706	-				+0.8
35,706	-				+0.2
35,706	-				-0.5
35,706	-				-0.5
35,706	-				+0.9
35,708	+				+1.3
35,709	-				-0.2
35,737	+				-1.5
35,737	+				+1.0
35,737	+				-1.4
35,737	+				+0.3
35,737	+				-1.5
35,737	+				+0.0
35,737	+				+1.3
35,737	+				-0.6
35,737	+				+0.1
35,737	+				-0.0
35,738	-				-0.5
35,738	-				+0.4
35,738	-				-2.0
35,738	-				+0.5
35,738	-				+0.3
35,738	-				+0.0
35,739	+				+0.5
35,739	+				+1.6
35,740	-				+1.9
35,740	-				+1.0
35,749	+				+0.9
35,749	+				-1.8
35,750	-				+0.1
35,750	-				+0.3
35,750	-				+0.3
35,750	-				-1.2
35,750	-				-2.0
35,752	+				-0.6
35,766	+				-0.6
35,793	-				+0.1
35,793	-				-0.0
35,794	+				-0.5
35,794	+				-1.1
35,794	+				-1.4
35,795	-				-0.3
35,795	-				+0.9
35,795	-				-1.3
35,795	-				-0.5
35,795	-				-2.0
35,846	+		IAI47_19025	0.12	-0.1
35,846	+		IAI47_19025	0.12	-0.9
35,847	-		IAI47_19025	0.12	-0.1
35,847	-		IAI47_19025	0.12	-0.5
35,851	+		IAI47_19025	0.13	-0.5
35,851	+		IAI47_19025	0.13	+0.1
35,852	-		IAI47_19025	0.13	-0.5
35,876	-		IAI47_19025	0.15	-0.9
35,933	+		IAI47_19025	0.21	+0.3
35,966	+		IAI47_19025	0.24	+0.0
35,966	+		IAI47_19025	0.24	-0.3
35,966	+		IAI47_19025	0.24	-0.3
35,994	+		IAI47_19025	0.27	+0.7
36,035	+		IAI47_19025	0.31	+0.5
36,061	+		IAI47_19025	0.33	-0.8
36,061	+		IAI47_19025	0.33	+1.6
36,062	-		IAI47_19025	0.33	+5.4
36,062	-		IAI47_19025	0.33	-1.5
36,062	-		IAI47_19025	0.33	-0.7
36,062	-		IAI47_19025	0.33	-0.1
36,062	-		IAI47_19025	0.33	-0.1
36,185	-		IAI47_19025	0.45	+0.7