Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_17195 and IAI47_17200 are separated by 47 nucleotides IAI47_17200 and IAI47_17205 overlap by 4 nucleotides IAI47_17205 and IAI47_17210 are separated by 3 nucleotides
IAI47_17195: IAI47_17195 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,639,919 to 3,640,398
_17195
IAI47_17200: IAI47_17200 - RNase adapter RapZ, at 3,640,446 to 3,641,300
_17200
IAI47_17205: IAI47_17205 - PTS phosphocarrier protein NPr, at 3,641,297 to 3,641,569
_17205
IAI47_17210: IAI47_17210 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,641,573 to 3,642,292
_17210
Position (kb)
3641
3642 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3640.371 kb on + strand at 3640.372 kb on - strand at 3640.372 kb on - strand at 3640.396 kb on + strand at 3640.396 kb on + strand at 3640.396 kb on + strand at 3640.397 kb on - strand at 3640.397 kb on - strand at 3640.427 kb on + strand at 3640.514 kb on + strand at 3640.515 kb on - strand at 3640.524 kb on + strand at 3640.524 kb on + strand at 3640.524 kb on + strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.525 kb on - strand at 3640.536 kb on - strand, within IAI47_17200 at 3640.552 kb on + strand, within IAI47_17200 at 3640.553 kb on - strand, within IAI47_17200 at 3640.565 kb on - strand, within IAI47_17200 at 3640.565 kb on - strand, within IAI47_17200 at 3640.568 kb on + strand, within IAI47_17200 at 3640.568 kb on + strand, within IAI47_17200 at 3640.568 kb on + strand, within IAI47_17200 at 3640.590 kb on - strand, within IAI47_17200 at 3640.619 kb on + strand, within IAI47_17200 at 3640.619 kb on + strand, within IAI47_17200 at 3640.619 kb on + strand, within IAI47_17200 at 3640.620 kb on - strand, within IAI47_17200 at 3640.620 kb on - strand, within IAI47_17200 at 3640.712 kb on + strand, within IAI47_17200 at 3640.713 kb on - strand, within IAI47_17200 at 3640.713 kb on - strand, within IAI47_17200 at 3640.713 kb on - strand, within IAI47_17200 at 3640.715 kb on + strand, within IAI47_17200 at 3640.716 kb on - strand, within IAI47_17200 at 3640.967 kb on + strand, within IAI47_17200 at 3640.967 kb on + strand, within IAI47_17200 at 3640.968 kb on - strand, within IAI47_17200 at 3640.968 kb on - strand, within IAI47_17200 at 3640.980 kb on + strand, within IAI47_17200 at 3640.980 kb on + strand, within IAI47_17200 at 3640.980 kb on + strand, within IAI47_17200 at 3640.980 kb on + strand, within IAI47_17200 at 3640.980 kb on + strand, within IAI47_17200 at 3640.981 kb on - strand, within IAI47_17200 at 3640.981 kb on - strand, within IAI47_17200 at 3640.981 kb on - strand, within IAI47_17200 at 3640.981 kb on - strand, within IAI47_17200 at 3641.081 kb on + strand, within IAI47_17200 at 3641.082 kb on - strand, within IAI47_17200 at 3641.094 kb on - strand, within IAI47_17200 at 3641.099 kb on + strand, within IAI47_17200 at 3641.099 kb on + strand, within IAI47_17200 at 3641.100 kb on - strand, within IAI47_17200 at 3641.100 kb on - strand, within IAI47_17200 at 3641.100 kb on - strand, within IAI47_17200 at 3641.100 kb on - strand, within IAI47_17200 at 3641.103 kb on + strand, within IAI47_17200 at 3641.103 kb on + strand, within IAI47_17200 at 3641.104 kb on - strand, within IAI47_17200 at 3641.104 kb on - strand, within IAI47_17200 at 3641.104 kb on - strand, within IAI47_17200 at 3641.104 kb on - strand, within IAI47_17200 at 3641.119 kb on - strand, within IAI47_17200 at 3641.119 kb on - strand, within IAI47_17200 at 3641.119 kb on - strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.159 kb on + strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.160 kb on - strand, within IAI47_17200 at 3641.163 kb on + strand, within IAI47_17200 at 3641.163 kb on + strand, within IAI47_17200 at 3641.163 kb on + strand, within IAI47_17200 at 3641.163 kb on + strand, within IAI47_17200 at 3641.163 kb on + strand, within IAI47_17200 at 3641.164 kb on - strand, within IAI47_17200 at 3641.164 kb on - strand, within IAI47_17200 at 3641.164 kb on - strand, within IAI47_17200 at 3641.169 kb on - strand, within IAI47_17200 at 3641.169 kb on - strand, within IAI47_17200 at 3641.169 kb on - strand, within IAI47_17200 at 3641.211 kb on + strand, within IAI47_17200 at 3641.211 kb on + strand, within IAI47_17200 at 3641.211 kb on + strand, within IAI47_17200 at 3641.211 kb on + strand, within IAI47_17200 at 3641.211 kb on + strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.212 kb on - strand, within IAI47_17200 at 3641.235 kb on + strand at 3641.235 kb on + strand at 3641.235 kb on + strand at 3641.235 kb on + strand at 3641.236 kb on - strand at 3641.252 kb on + strand at 3641.252 kb on + strand at 3641.253 kb on - strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.260 kb on + strand at 3641.261 kb on - strand at 3641.261 kb on - strand at 3641.276 kb on + strand at 3641.276 kb on + strand at 3641.277 kb on - strand at 3641.277 kb on - strand at 3641.316 kb on + strand at 3641.316 kb on + strand at 3641.364 kb on + strand, within IAI47_17205 at 3641.541 kb on + strand, within IAI47_17205 at 3641.542 kb on - strand at 3641.542 kb on - strand at 3641.542 kb on - strand at 3641.567 kb on + strand at 3641.567 kb on + strand at 3641.568 kb on - strand at 3641.575 kb on - strand at 3641.575 kb on - strand at 3641.588 kb on - strand at 3641.588 kb on - strand at 3641.588 kb on - strand at 3641.594 kb on + strand at 3641.595 kb on - strand at 3641.634 kb on - strand at 3641.658 kb on + strand, within IAI47_17210 at 3641.659 kb on - strand, within IAI47_17210 at 3641.659 kb on - strand, within IAI47_17210 at 3641.734 kb on + strand, within IAI47_17210 at 3641.752 kb on + strand, within IAI47_17210 at 3641.753 kb on - strand, within IAI47_17210 at 3641.760 kb on + strand, within IAI47_17210 at 3641.761 kb on - strand, within IAI47_17210 at 3641.761 kb on - strand, within IAI47_17210 at 3641.792 kb on - strand, within IAI47_17210 at 3641.812 kb on + strand, within IAI47_17210 at 3641.813 kb on - strand, within IAI47_17210 at 3641.820 kb on + strand, within IAI47_17210 at 3641.820 kb on + strand, within IAI47_17210 at 3641.820 kb on + strand, within IAI47_17210 at 3641.821 kb on - strand, within IAI47_17210 at 3641.821 kb on - strand, within IAI47_17210 at 3641.842 kb on + strand, within IAI47_17210 at 3641.842 kb on + strand, within IAI47_17210 at 3641.842 kb on + strand, within IAI47_17210 at 3641.842 kb on + strand, within IAI47_17210 at 3641.843 kb on - strand, within IAI47_17210 at 3641.980 kb on + strand, within IAI47_17210 at 3641.981 kb on - strand, within IAI47_17210 at 3641.981 kb on - strand, within IAI47_17210 at 3642.114 kb on + strand, within IAI47_17210 at 3642.114 kb on + strand, within IAI47_17210 at 3642.114 kb on + strand, within IAI47_17210 at 3642.114 kb on + strand, within IAI47_17210 at 3642.114 kb on + strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.115 kb on - strand, within IAI47_17210 at 3642.119 kb on - strand, within IAI47_17210 at 3642.119 kb on - strand, within IAI47_17210 at 3642.119 kb on - strand, within IAI47_17210 at 3642.119 kb on - strand, within IAI47_17210 at 3642.131 kb on + strand, within IAI47_17210 at 3642.197 kb on + strand, within IAI47_17210 at 3642.198 kb on - strand, within IAI47_17210 at 3642.198 kb on - strand, within IAI47_17210 at 3642.202 kb on + strand, within IAI47_17210 at 3642.203 kb on - strand, within IAI47_17210 at 3642.227 kb on + strand at 3642.227 kb on + strand at 3642.227 kb on + strand at 3642.228 kb on - strand at 3642.228 kb on - strand at 3642.228 kb on - strand at 3642.228 kb on - strand at 3642.233 kb on + strand at 3642.233 kb on + strand at 3642.233 kb on + strand at 3642.233 kb on + strand at 3642.234 kb on - strand at 3642.234 kb on - strand at 3642.234 kb on - strand at 3642.259 kb on + strand at 3642.260 kb on - strand at 3642.260 kb on - strand at 3642.260 kb on - strand at 3642.260 kb on - strand at 3642.280 kb on + strand at 3642.280 kb on + strand at 3642.280 kb on + strand at 3642.280 kb on + strand at 3642.281 kb on - strand at 3642.281 kb on - strand at 3642.281 kb on - strand at 3642.281 kb on - strand at 3642.281 kb on - strand at 3642.281 kb on - strand at 3642.337 kb on + strand at 3642.337 kb on + strand at 3642.337 kb on + strand at 3642.338 kb on - strand at 3642.338 kb on - strand at 3642.338 kb on - strand at 3642.350 kb on + strand at 3642.365 kb on - strand at 3642.405 kb on - strand at 3642.445 kb on + strand at 3642.487 kb on + strand at 3642.488 kb on - strand at 3642.497 kb on + strand at 3642.512 kb on + strand at 3642.513 kb on - strand at 3642.513 kb on - strand at 3642.520 kb on + strand at 3642.521 kb on - strand at 3642.521 kb on - strand at 3642.524 kb on - strand at 3642.530 kb on + strand at 3642.533 kb on + strand at 3642.534 kb on - strand at 3642.557 kb on + strand at 3642.558 kb on - strand at 3642.563 kb on + strand at 3642.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 3,640,371 + -1.8 3,640,372 - -0.6 3,640,372 - -1.9 3,640,396 + +0.3 3,640,396 + +0.0 3,640,396 + -0.0 3,640,397 - +0.1 3,640,397 - -0.2 3,640,427 + -0.2 3,640,514 + +1.1 3,640,515 - +0.4 3,640,524 + -0.4 3,640,524 + -0.1 3,640,524 + +0.4 3,640,525 - -1.3 3,640,525 - -1.8 3,640,525 - -0.2 3,640,525 - -1.9 3,640,525 - -1.9 3,640,525 - -1.7 3,640,525 - -2.5 3,640,525 - -1.3 3,640,525 - -0.5 3,640,525 - -3.1 3,640,536 - IAI47_17200 0.11 -0.8 3,640,552 + IAI47_17200 0.12 -0.2 3,640,553 - IAI47_17200 0.13 +0.8 3,640,565 - IAI47_17200 0.14 -2.6 3,640,565 - IAI47_17200 0.14 +0.8 3,640,568 + IAI47_17200 0.14 -1.3 3,640,568 + IAI47_17200 0.14 +0.2 3,640,568 + IAI47_17200 0.14 -1.0 3,640,590 - IAI47_17200 0.17 -2.5 3,640,619 + IAI47_17200 0.20 -2.2 3,640,619 + IAI47_17200 0.20 +0.7 3,640,619 + IAI47_17200 0.20 -0.9 3,640,620 - IAI47_17200 0.20 +0.3 3,640,620 - IAI47_17200 0.20 -1.6 3,640,712 + IAI47_17200 0.31 -2.0 3,640,713 - IAI47_17200 0.31 -0.3 3,640,713 - IAI47_17200 0.31 +0.5 3,640,713 - IAI47_17200 0.31 +0.5 3,640,715 + IAI47_17200 0.31 +0.3 3,640,716 - IAI47_17200 0.32 -3.3 3,640,967 + IAI47_17200 0.61 +0.6 3,640,967 + IAI47_17200 0.61 -0.7 3,640,968 - IAI47_17200 0.61 -1.1 3,640,968 - IAI47_17200 0.61 -0.2 3,640,980 + IAI47_17200 0.62 +0.5 3,640,980 + IAI47_17200 0.62 -0.1 3,640,980 + IAI47_17200 0.62 -0.4 3,640,980 + IAI47_17200 0.62 +0.0 3,640,980 + IAI47_17200 0.62 -0.1 3,640,981 - IAI47_17200 0.63 -0.0 3,640,981 - IAI47_17200 0.63 -0.4 3,640,981 - IAI47_17200 0.63 +0.2 3,640,981 - IAI47_17200 0.63 -0.9 3,641,081 + IAI47_17200 0.74 +0.3 3,641,082 - IAI47_17200 0.74 +0.3 3,641,094 - IAI47_17200 0.76 -0.4 3,641,099 + IAI47_17200 0.76 -1.3 3,641,099 + IAI47_17200 0.76 -1.8 3,641,100 - IAI47_17200 0.76 +0.4 3,641,100 - IAI47_17200 0.76 -0.1 3,641,100 - IAI47_17200 0.76 +0.8 3,641,100 - IAI47_17200 0.76 -1.1 3,641,103 + IAI47_17200 0.77 +1.2 3,641,103 + IAI47_17200 0.77 -0.4 3,641,104 - IAI47_17200 0.77 -2.1 3,641,104 - IAI47_17200 0.77 -2.3 3,641,104 - IAI47_17200 0.77 -0.4 3,641,104 - IAI47_17200 0.77 -0.3 3,641,119 - IAI47_17200 0.79 -0.8 3,641,119 - IAI47_17200 0.79 -1.6 3,641,119 - IAI47_17200 0.79 -0.0 3,641,159 + IAI47_17200 0.83 -0.7 3,641,159 + IAI47_17200 0.83 +1.3 3,641,159 + IAI47_17200 0.83 +0.6 3,641,159 + IAI47_17200 0.83 +0.7 3,641,159 + IAI47_17200 0.83 +0.7 3,641,159 + IAI47_17200 0.83 +0.1 3,641,159 + IAI47_17200 0.83 +0.3 3,641,159 + IAI47_17200 0.83 +1.2 3,641,159 + IAI47_17200 0.83 -1.0 3,641,159 + IAI47_17200 0.83 +0.2 3,641,159 + IAI47_17200 0.83 +1.5 3,641,159 + IAI47_17200 0.83 -2.4 3,641,160 - IAI47_17200 0.84 +1.1 3,641,160 - IAI47_17200 0.84 +0.3 3,641,160 - IAI47_17200 0.84 +0.3 3,641,160 - IAI47_17200 0.84 +1.4 3,641,160 - IAI47_17200 0.84 -0.7 3,641,160 - IAI47_17200 0.84 +0.3 3,641,160 - IAI47_17200 0.84 -0.3 3,641,163 + IAI47_17200 0.84 -0.5 3,641,163 + IAI47_17200 0.84 +0.6 3,641,163 + IAI47_17200 0.84 +0.7 3,641,163 + IAI47_17200 0.84 -1.4 3,641,163 + IAI47_17200 0.84 +0.0 3,641,164 - IAI47_17200 0.84 -0.3 3,641,164 - IAI47_17200 0.84 -0.7 3,641,164 - IAI47_17200 0.84 +0.7 3,641,169 - IAI47_17200 0.85 -0.4 3,641,169 - IAI47_17200 0.85 +1.6 3,641,169 - IAI47_17200 0.85 -0.9 3,641,211 + IAI47_17200 0.89 +2.6 3,641,211 + IAI47_17200 0.89 -1.1 3,641,211 + IAI47_17200 0.89 -0.8 3,641,211 + IAI47_17200 0.89 -3.1 3,641,211 + IAI47_17200 0.89 -2.7 3,641,212 - IAI47_17200 0.90 -0.4 3,641,212 - IAI47_17200 0.90 +0.8 3,641,212 - IAI47_17200 0.90 -0.1 3,641,212 - IAI47_17200 0.90 +0.3 3,641,212 - IAI47_17200 0.90 -0.2 3,641,212 - IAI47_17200 0.90 -0.1 3,641,235 + +1.1 3,641,235 + +0.0 3,641,235 + -1.5 3,641,235 + +0.1 3,641,236 - -1.5 3,641,252 + +1.5 3,641,252 + +0.7 3,641,253 - -0.1 3,641,260 + +0.2 3,641,260 + -0.8 3,641,260 + +1.8 3,641,260 + -0.6 3,641,260 + -0.7 3,641,260 + +1.3 3,641,260 + +0.7 3,641,261 - +1.1 3,641,261 - -0.4 3,641,276 + +0.3 3,641,276 + +0.5 3,641,277 - -0.6 3,641,277 - -0.2 3,641,316 + +2.3 3,641,316 + -1.1 3,641,364 + IAI47_17205 0.25 -0.5 3,641,541 + IAI47_17205 0.89 -2.4 3,641,542 - -0.6 3,641,542 - +1.2 3,641,542 - -0.2 3,641,567 + -1.0 3,641,567 + -1.9 3,641,568 - -0.4 3,641,575 - -1.9 3,641,575 - -0.2 3,641,588 - -0.1 3,641,588 - -0.3 3,641,588 - -0.7 3,641,594 + +0.5 3,641,595 - -1.4 3,641,634 - +0.0 3,641,658 + IAI47_17210 0.12 -1.7 3,641,659 - IAI47_17210 0.12 -0.4 3,641,659 - IAI47_17210 0.12 +0.6 3,641,734 + IAI47_17210 0.22 -0.3 3,641,752 + IAI47_17210 0.25 -0.4 3,641,753 - IAI47_17210 0.25 -0.2 3,641,760 + IAI47_17210 0.26 +0.3 3,641,761 - IAI47_17210 0.26 -2.2 3,641,761 - IAI47_17210 0.26 -1.1 3,641,792 - IAI47_17210 0.30 -0.6 3,641,812 + IAI47_17210 0.33 +2.4 3,641,813 - IAI47_17210 0.33 +0.0 3,641,820 + IAI47_17210 0.34 -0.2 3,641,820 + IAI47_17210 0.34 +2.1 3,641,820 + IAI47_17210 0.34 -0.9 3,641,821 - IAI47_17210 0.34 +0.0 3,641,821 - IAI47_17210 0.34 -0.4 3,641,842 + IAI47_17210 0.37 +0.4 3,641,842 + IAI47_17210 0.37 -0.9 3,641,842 + IAI47_17210 0.37 -0.0 3,641,842 + IAI47_17210 0.37 -0.6 3,641,843 - IAI47_17210 0.38 -1.3 3,641,980 + IAI47_17210 0.57 -0.1 3,641,981 - IAI47_17210 0.57 -1.2 3,641,981 - IAI47_17210 0.57 -0.2 3,642,114 + IAI47_17210 0.75 -2.0 3,642,114 + IAI47_17210 0.75 -1.3 3,642,114 + IAI47_17210 0.75 -1.4 3,642,114 + IAI47_17210 0.75 -0.9 3,642,114 + IAI47_17210 0.75 -1.7 3,642,115 - IAI47_17210 0.75 +0.6 3,642,115 - IAI47_17210 0.75 -1.8 3,642,115 - IAI47_17210 0.75 -0.7 3,642,115 - IAI47_17210 0.75 +1.3 3,642,115 - IAI47_17210 0.75 +0.8 3,642,115 - IAI47_17210 0.75 +4.5 3,642,119 - IAI47_17210 0.76 -1.1 3,642,119 - IAI47_17210 0.76 +1.2 3,642,119 - IAI47_17210 0.76 -0.2 3,642,119 - IAI47_17210 0.76 +1.2 3,642,131 + IAI47_17210 0.78 -0.9 3,642,197 + IAI47_17210 0.87 -1.4 3,642,198 - IAI47_17210 0.87 -0.4 3,642,198 - IAI47_17210 0.87 +0.2 3,642,202 + IAI47_17210 0.87 -1.3 3,642,203 - IAI47_17210 0.88 -1.5 3,642,227 + -2.1 3,642,227 + +0.0 3,642,227 + -1.8 3,642,228 - +1.1 3,642,228 - -0.4 3,642,228 - +0.1 3,642,228 - -0.9 3,642,233 + +0.4 3,642,233 + -0.4 3,642,233 + +0.9 3,642,233 + +0.0 3,642,234 - +0.3 3,642,234 - -0.5 3,642,234 - +2.2 3,642,259 + +0.0 3,642,260 - +2.3 3,642,260 - -0.3 3,642,260 - +1.2 3,642,260 - +1.6 3,642,280 + -1.3 3,642,280 + -1.4 3,642,280 + -1.1 3,642,280 + -1.9 3,642,281 - -1.7 3,642,281 - +0.5 3,642,281 - +2.3 3,642,281 - +0.9 3,642,281 - -0.2 3,642,281 - +0.7 3,642,337 + -3.5 3,642,337 + -3.7 3,642,337 + +1.2 3,642,338 - -2.5 3,642,338 - +0.1 3,642,338 - -0.5 3,642,350 + -1.0 3,642,365 - -0.3 3,642,405 - -0.9 3,642,445 + -0.3 3,642,487 + -0.1 3,642,488 - +0.1 3,642,497 + -1.9 3,642,512 + +0.3 3,642,513 - -0.8 3,642,513 - +0.5 3,642,520 + +1.0 3,642,521 - -2.0 3,642,521 - +1.0 3,642,524 - -0.3 3,642,530 + -2.0 3,642,533 + -1.5 3,642,534 - -1.3 3,642,557 + +1.0 3,642,558 - +0.9 3,642,563 + +0.8 3,642,564 - +1.5
Or see this region's nucleotide sequence