Strain Fitness in Pantoea sp. MT58 around IAI47_17205

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_17195 and IAI47_17200 are separated by 47 nucleotidesIAI47_17200 and IAI47_17205 overlap by 4 nucleotidesIAI47_17205 and IAI47_17210 are separated by 3 nucleotides IAI47_17195: IAI47_17195 - PTS IIA-like nitrogen regulatory protein PtsN, at 3,639,919 to 3,640,398 _17195 IAI47_17200: IAI47_17200 - RNase adapter RapZ, at 3,640,446 to 3,641,300 _17200 IAI47_17205: IAI47_17205 - PTS phosphocarrier protein NPr, at 3,641,297 to 3,641,569 _17205 IAI47_17210: IAI47_17210 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,641,573 to 3,642,292 _17210 Position (kb) 3641 3642Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3640.371 kb on + strandat 3640.372 kb on - strandat 3640.372 kb on - strandat 3640.396 kb on + strandat 3640.396 kb on + strandat 3640.396 kb on + strandat 3640.397 kb on - strandat 3640.397 kb on - strandat 3640.427 kb on + strandat 3640.514 kb on + strandat 3640.515 kb on - strandat 3640.524 kb on + strandat 3640.524 kb on + strandat 3640.524 kb on + strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.525 kb on - strandat 3640.536 kb on - strand, within IAI47_17200at 3640.552 kb on + strand, within IAI47_17200at 3640.553 kb on - strand, within IAI47_17200at 3640.565 kb on - strand, within IAI47_17200at 3640.565 kb on - strand, within IAI47_17200at 3640.568 kb on + strand, within IAI47_17200at 3640.568 kb on + strand, within IAI47_17200at 3640.568 kb on + strand, within IAI47_17200at 3640.590 kb on - strand, within IAI47_17200at 3640.619 kb on + strand, within IAI47_17200at 3640.619 kb on + strand, within IAI47_17200at 3640.619 kb on + strand, within IAI47_17200at 3640.620 kb on - strand, within IAI47_17200at 3640.620 kb on - strand, within IAI47_17200at 3640.712 kb on + strand, within IAI47_17200at 3640.713 kb on - strand, within IAI47_17200at 3640.713 kb on - strand, within IAI47_17200at 3640.713 kb on - strand, within IAI47_17200at 3640.715 kb on + strand, within IAI47_17200at 3640.716 kb on - strand, within IAI47_17200at 3640.967 kb on + strand, within IAI47_17200at 3640.967 kb on + strand, within IAI47_17200at 3640.968 kb on - strand, within IAI47_17200at 3640.968 kb on - strand, within IAI47_17200at 3640.980 kb on + strand, within IAI47_17200at 3640.980 kb on + strand, within IAI47_17200at 3640.980 kb on + strand, within IAI47_17200at 3640.980 kb on + strand, within IAI47_17200at 3640.980 kb on + strand, within IAI47_17200at 3640.981 kb on - strand, within IAI47_17200at 3640.981 kb on - strand, within IAI47_17200at 3640.981 kb on - strand, within IAI47_17200at 3640.981 kb on - strand, within IAI47_17200at 3641.081 kb on + strand, within IAI47_17200at 3641.082 kb on - strand, within IAI47_17200at 3641.094 kb on - strand, within IAI47_17200at 3641.099 kb on + strand, within IAI47_17200at 3641.099 kb on + strand, within IAI47_17200at 3641.100 kb on - strand, within IAI47_17200at 3641.100 kb on - strand, within IAI47_17200at 3641.100 kb on - strand, within IAI47_17200at 3641.100 kb on - strand, within IAI47_17200at 3641.103 kb on + strand, within IAI47_17200at 3641.103 kb on + strand, within IAI47_17200at 3641.104 kb on - strand, within IAI47_17200at 3641.104 kb on - strand, within IAI47_17200at 3641.104 kb on - strand, within IAI47_17200at 3641.104 kb on - strand, within IAI47_17200at 3641.119 kb on - strand, within IAI47_17200at 3641.119 kb on - strand, within IAI47_17200at 3641.119 kb on - strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.159 kb on + strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.160 kb on - strand, within IAI47_17200at 3641.163 kb on + strand, within IAI47_17200at 3641.163 kb on + strand, within IAI47_17200at 3641.163 kb on + strand, within IAI47_17200at 3641.163 kb on + strand, within IAI47_17200at 3641.163 kb on + strand, within IAI47_17200at 3641.164 kb on - strand, within IAI47_17200at 3641.164 kb on - strand, within IAI47_17200at 3641.164 kb on - strand, within IAI47_17200at 3641.169 kb on - strand, within IAI47_17200at 3641.169 kb on - strand, within IAI47_17200at 3641.169 kb on - strand, within IAI47_17200at 3641.211 kb on + strand, within IAI47_17200at 3641.211 kb on + strand, within IAI47_17200at 3641.211 kb on + strand, within IAI47_17200at 3641.211 kb on + strand, within IAI47_17200at 3641.211 kb on + strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.212 kb on - strand, within IAI47_17200at 3641.235 kb on + strandat 3641.235 kb on + strandat 3641.235 kb on + strandat 3641.235 kb on + strandat 3641.236 kb on - strandat 3641.252 kb on + strandat 3641.252 kb on + strandat 3641.253 kb on - strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.260 kb on + strandat 3641.261 kb on - strandat 3641.261 kb on - strandat 3641.276 kb on + strandat 3641.276 kb on + strandat 3641.277 kb on - strandat 3641.277 kb on - strandat 3641.316 kb on + strandat 3641.316 kb on + strandat 3641.364 kb on + strand, within IAI47_17205at 3641.541 kb on + strand, within IAI47_17205at 3641.542 kb on - strandat 3641.542 kb on - strandat 3641.542 kb on - strandat 3641.567 kb on + strandat 3641.567 kb on + strandat 3641.568 kb on - strandat 3641.575 kb on - strandat 3641.575 kb on - strandat 3641.588 kb on - strandat 3641.588 kb on - strandat 3641.588 kb on - strandat 3641.594 kb on + strandat 3641.595 kb on - strandat 3641.634 kb on - strandat 3641.658 kb on + strand, within IAI47_17210at 3641.659 kb on - strand, within IAI47_17210at 3641.659 kb on - strand, within IAI47_17210at 3641.734 kb on + strand, within IAI47_17210at 3641.752 kb on + strand, within IAI47_17210at 3641.753 kb on - strand, within IAI47_17210at 3641.760 kb on + strand, within IAI47_17210at 3641.761 kb on - strand, within IAI47_17210at 3641.761 kb on - strand, within IAI47_17210at 3641.792 kb on - strand, within IAI47_17210at 3641.812 kb on + strand, within IAI47_17210at 3641.813 kb on - strand, within IAI47_17210at 3641.820 kb on + strand, within IAI47_17210at 3641.820 kb on + strand, within IAI47_17210at 3641.820 kb on + strand, within IAI47_17210at 3641.821 kb on - strand, within IAI47_17210at 3641.821 kb on - strand, within IAI47_17210at 3641.842 kb on + strand, within IAI47_17210at 3641.842 kb on + strand, within IAI47_17210at 3641.842 kb on + strand, within IAI47_17210at 3641.842 kb on + strand, within IAI47_17210at 3641.843 kb on - strand, within IAI47_17210at 3641.980 kb on + strand, within IAI47_17210at 3641.981 kb on - strand, within IAI47_17210at 3641.981 kb on - strand, within IAI47_17210at 3642.114 kb on + strand, within IAI47_17210at 3642.114 kb on + strand, within IAI47_17210at 3642.114 kb on + strand, within IAI47_17210at 3642.114 kb on + strand, within IAI47_17210at 3642.114 kb on + strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.115 kb on - strand, within IAI47_17210at 3642.119 kb on - strand, within IAI47_17210at 3642.119 kb on - strand, within IAI47_17210at 3642.119 kb on - strand, within IAI47_17210at 3642.119 kb on - strand, within IAI47_17210at 3642.131 kb on + strand, within IAI47_17210at 3642.197 kb on + strand, within IAI47_17210at 3642.198 kb on - strand, within IAI47_17210at 3642.198 kb on - strand, within IAI47_17210at 3642.202 kb on + strand, within IAI47_17210at 3642.203 kb on - strand, within IAI47_17210at 3642.227 kb on + strandat 3642.227 kb on + strandat 3642.227 kb on + strandat 3642.228 kb on - strandat 3642.228 kb on - strandat 3642.228 kb on - strandat 3642.228 kb on - strandat 3642.233 kb on + strandat 3642.233 kb on + strandat 3642.233 kb on + strandat 3642.233 kb on + strandat 3642.234 kb on - strandat 3642.234 kb on - strandat 3642.234 kb on - strandat 3642.259 kb on + strandat 3642.260 kb on - strandat 3642.260 kb on - strandat 3642.260 kb on - strandat 3642.260 kb on - strandat 3642.280 kb on + strandat 3642.280 kb on + strandat 3642.280 kb on + strandat 3642.280 kb on + strandat 3642.281 kb on - strandat 3642.281 kb on - strandat 3642.281 kb on - strandat 3642.281 kb on - strandat 3642.281 kb on - strandat 3642.281 kb on - strandat 3642.337 kb on + strandat 3642.337 kb on + strandat 3642.337 kb on + strandat 3642.338 kb on - strandat 3642.338 kb on - strandat 3642.338 kb on - strandat 3642.350 kb on + strandat 3642.365 kb on - strandat 3642.405 kb on - strandat 3642.445 kb on + strandat 3642.487 kb on + strandat 3642.488 kb on - strandat 3642.497 kb on + strandat 3642.512 kb on + strandat 3642.513 kb on - strandat 3642.513 kb on - strandat 3642.520 kb on + strandat 3642.521 kb on - strandat 3642.521 kb on - strandat 3642.524 kb on - strandat 3642.530 kb on + strandat 3642.533 kb on + strandat 3642.534 kb on - strandat 3642.557 kb on + strandat 3642.558 kb on - strandat 3642.563 kb on + strandat 3642.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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3,640,371 + -1.8
3,640,372 - -0.6
3,640,372 - -1.9
3,640,396 + +0.3
3,640,396 + +0.0
3,640,396 + -0.0
3,640,397 - +0.1
3,640,397 - -0.2
3,640,427 + -0.2
3,640,514 + +1.1
3,640,515 - +0.4
3,640,524 + -0.4
3,640,524 + -0.1
3,640,524 + +0.4
3,640,525 - -1.3
3,640,525 - -1.8
3,640,525 - -0.2
3,640,525 - -1.9
3,640,525 - -1.9
3,640,525 - -1.7
3,640,525 - -2.5
3,640,525 - -1.3
3,640,525 - -0.5
3,640,525 - -3.1
3,640,536 - IAI47_17200 0.11 -0.8
3,640,552 + IAI47_17200 0.12 -0.2
3,640,553 - IAI47_17200 0.13 +0.8
3,640,565 - IAI47_17200 0.14 -2.6
3,640,565 - IAI47_17200 0.14 +0.8
3,640,568 + IAI47_17200 0.14 -1.3
3,640,568 + IAI47_17200 0.14 +0.2
3,640,568 + IAI47_17200 0.14 -1.0
3,640,590 - IAI47_17200 0.17 -2.5
3,640,619 + IAI47_17200 0.20 -2.2
3,640,619 + IAI47_17200 0.20 +0.7
3,640,619 + IAI47_17200 0.20 -0.9
3,640,620 - IAI47_17200 0.20 +0.3
3,640,620 - IAI47_17200 0.20 -1.6
3,640,712 + IAI47_17200 0.31 -2.0
3,640,713 - IAI47_17200 0.31 -0.3
3,640,713 - IAI47_17200 0.31 +0.5
3,640,713 - IAI47_17200 0.31 +0.5
3,640,715 + IAI47_17200 0.31 +0.3
3,640,716 - IAI47_17200 0.32 -3.3
3,640,967 + IAI47_17200 0.61 +0.6
3,640,967 + IAI47_17200 0.61 -0.7
3,640,968 - IAI47_17200 0.61 -1.1
3,640,968 - IAI47_17200 0.61 -0.2
3,640,980 + IAI47_17200 0.62 +0.5
3,640,980 + IAI47_17200 0.62 -0.1
3,640,980 + IAI47_17200 0.62 -0.4
3,640,980 + IAI47_17200 0.62 +0.0
3,640,980 + IAI47_17200 0.62 -0.1
3,640,981 - IAI47_17200 0.63 -0.0
3,640,981 - IAI47_17200 0.63 -0.4
3,640,981 - IAI47_17200 0.63 +0.2
3,640,981 - IAI47_17200 0.63 -0.9
3,641,081 + IAI47_17200 0.74 +0.3
3,641,082 - IAI47_17200 0.74 +0.3
3,641,094 - IAI47_17200 0.76 -0.4
3,641,099 + IAI47_17200 0.76 -1.3
3,641,099 + IAI47_17200 0.76 -1.8
3,641,100 - IAI47_17200 0.76 +0.4
3,641,100 - IAI47_17200 0.76 -0.1
3,641,100 - IAI47_17200 0.76 +0.8
3,641,100 - IAI47_17200 0.76 -1.1
3,641,103 + IAI47_17200 0.77 +1.2
3,641,103 + IAI47_17200 0.77 -0.4
3,641,104 - IAI47_17200 0.77 -2.1
3,641,104 - IAI47_17200 0.77 -2.3
3,641,104 - IAI47_17200 0.77 -0.4
3,641,104 - IAI47_17200 0.77 -0.3
3,641,119 - IAI47_17200 0.79 -0.8
3,641,119 - IAI47_17200 0.79 -1.6
3,641,119 - IAI47_17200 0.79 -0.0
3,641,159 + IAI47_17200 0.83 -0.7
3,641,159 + IAI47_17200 0.83 +1.3
3,641,159 + IAI47_17200 0.83 +0.6
3,641,159 + IAI47_17200 0.83 +0.7
3,641,159 + IAI47_17200 0.83 +0.7
3,641,159 + IAI47_17200 0.83 +0.1
3,641,159 + IAI47_17200 0.83 +0.3
3,641,159 + IAI47_17200 0.83 +1.2
3,641,159 + IAI47_17200 0.83 -1.0
3,641,159 + IAI47_17200 0.83 +0.2
3,641,159 + IAI47_17200 0.83 +1.5
3,641,159 + IAI47_17200 0.83 -2.4
3,641,160 - IAI47_17200 0.84 +1.1
3,641,160 - IAI47_17200 0.84 +0.3
3,641,160 - IAI47_17200 0.84 +0.3
3,641,160 - IAI47_17200 0.84 +1.4
3,641,160 - IAI47_17200 0.84 -0.7
3,641,160 - IAI47_17200 0.84 +0.3
3,641,160 - IAI47_17200 0.84 -0.3
3,641,163 + IAI47_17200 0.84 -0.5
3,641,163 + IAI47_17200 0.84 +0.6
3,641,163 + IAI47_17200 0.84 +0.7
3,641,163 + IAI47_17200 0.84 -1.4
3,641,163 + IAI47_17200 0.84 +0.0
3,641,164 - IAI47_17200 0.84 -0.3
3,641,164 - IAI47_17200 0.84 -0.7
3,641,164 - IAI47_17200 0.84 +0.7
3,641,169 - IAI47_17200 0.85 -0.4
3,641,169 - IAI47_17200 0.85 +1.6
3,641,169 - IAI47_17200 0.85 -0.9
3,641,211 + IAI47_17200 0.89 +2.6
3,641,211 + IAI47_17200 0.89 -1.1
3,641,211 + IAI47_17200 0.89 -0.8
3,641,211 + IAI47_17200 0.89 -3.1
3,641,211 + IAI47_17200 0.89 -2.7
3,641,212 - IAI47_17200 0.90 -0.4
3,641,212 - IAI47_17200 0.90 +0.8
3,641,212 - IAI47_17200 0.90 -0.1
3,641,212 - IAI47_17200 0.90 +0.3
3,641,212 - IAI47_17200 0.90 -0.2
3,641,212 - IAI47_17200 0.90 -0.1
3,641,235 + +1.1
3,641,235 + +0.0
3,641,235 + -1.5
3,641,235 + +0.1
3,641,236 - -1.5
3,641,252 + +1.5
3,641,252 + +0.7
3,641,253 - -0.1
3,641,260 + +0.2
3,641,260 + -0.8
3,641,260 + +1.8
3,641,260 + -0.6
3,641,260 + -0.7
3,641,260 + +1.3
3,641,260 + +0.7
3,641,261 - +1.1
3,641,261 - -0.4
3,641,276 + +0.3
3,641,276 + +0.5
3,641,277 - -0.6
3,641,277 - -0.2
3,641,316 + +2.3
3,641,316 + -1.1
3,641,364 + IAI47_17205 0.25 -0.5
3,641,541 + IAI47_17205 0.89 -2.4
3,641,542 - -0.6
3,641,542 - +1.2
3,641,542 - -0.2
3,641,567 + -1.0
3,641,567 + -1.9
3,641,568 - -0.4
3,641,575 - -1.9
3,641,575 - -0.2
3,641,588 - -0.1
3,641,588 - -0.3
3,641,588 - -0.7
3,641,594 + +0.5
3,641,595 - -1.4
3,641,634 - +0.0
3,641,658 + IAI47_17210 0.12 -1.7
3,641,659 - IAI47_17210 0.12 -0.4
3,641,659 - IAI47_17210 0.12 +0.6
3,641,734 + IAI47_17210 0.22 -0.3
3,641,752 + IAI47_17210 0.25 -0.4
3,641,753 - IAI47_17210 0.25 -0.2
3,641,760 + IAI47_17210 0.26 +0.3
3,641,761 - IAI47_17210 0.26 -2.2
3,641,761 - IAI47_17210 0.26 -1.1
3,641,792 - IAI47_17210 0.30 -0.6
3,641,812 + IAI47_17210 0.33 +2.4
3,641,813 - IAI47_17210 0.33 +0.0
3,641,820 + IAI47_17210 0.34 -0.2
3,641,820 + IAI47_17210 0.34 +2.1
3,641,820 + IAI47_17210 0.34 -0.9
3,641,821 - IAI47_17210 0.34 +0.0
3,641,821 - IAI47_17210 0.34 -0.4
3,641,842 + IAI47_17210 0.37 +0.4
3,641,842 + IAI47_17210 0.37 -0.9
3,641,842 + IAI47_17210 0.37 -0.0
3,641,842 + IAI47_17210 0.37 -0.6
3,641,843 - IAI47_17210 0.38 -1.3
3,641,980 + IAI47_17210 0.57 -0.1
3,641,981 - IAI47_17210 0.57 -1.2
3,641,981 - IAI47_17210 0.57 -0.2
3,642,114 + IAI47_17210 0.75 -2.0
3,642,114 + IAI47_17210 0.75 -1.3
3,642,114 + IAI47_17210 0.75 -1.4
3,642,114 + IAI47_17210 0.75 -0.9
3,642,114 + IAI47_17210 0.75 -1.7
3,642,115 - IAI47_17210 0.75 +0.6
3,642,115 - IAI47_17210 0.75 -1.8
3,642,115 - IAI47_17210 0.75 -0.7
3,642,115 - IAI47_17210 0.75 +1.3
3,642,115 - IAI47_17210 0.75 +0.8
3,642,115 - IAI47_17210 0.75 +4.5
3,642,119 - IAI47_17210 0.76 -1.1
3,642,119 - IAI47_17210 0.76 +1.2
3,642,119 - IAI47_17210 0.76 -0.2
3,642,119 - IAI47_17210 0.76 +1.2
3,642,131 + IAI47_17210 0.78 -0.9
3,642,197 + IAI47_17210 0.87 -1.4
3,642,198 - IAI47_17210 0.87 -0.4
3,642,198 - IAI47_17210 0.87 +0.2
3,642,202 + IAI47_17210 0.87 -1.3
3,642,203 - IAI47_17210 0.88 -1.5
3,642,227 + -2.1
3,642,227 + +0.0
3,642,227 + -1.8
3,642,228 - +1.1
3,642,228 - -0.4
3,642,228 - +0.1
3,642,228 - -0.9
3,642,233 + +0.4
3,642,233 + -0.4
3,642,233 + +0.9
3,642,233 + +0.0
3,642,234 - +0.3
3,642,234 - -0.5
3,642,234 - +2.2
3,642,259 + +0.0
3,642,260 - +2.3
3,642,260 - -0.3
3,642,260 - +1.2
3,642,260 - +1.6
3,642,280 + -1.3
3,642,280 + -1.4
3,642,280 + -1.1
3,642,280 + -1.9
3,642,281 - -1.7
3,642,281 - +0.5
3,642,281 - +2.3
3,642,281 - +0.9
3,642,281 - -0.2
3,642,281 - +0.7
3,642,337 + -3.5
3,642,337 + -3.7
3,642,337 + +1.2
3,642,338 - -2.5
3,642,338 - +0.1
3,642,338 - -0.5
3,642,350 + -1.0
3,642,365 - -0.3
3,642,405 - -0.9
3,642,445 + -0.3
3,642,487 + -0.1
3,642,488 - +0.1
3,642,497 + -1.9
3,642,512 + +0.3
3,642,513 - -0.8
3,642,513 - +0.5
3,642,520 + +1.0
3,642,521 - -2.0
3,642,521 - +1.0
3,642,524 - -0.3
3,642,530 + -2.0
3,642,533 + -1.5
3,642,534 - -1.3
3,642,557 + +1.0
3,642,558 - +0.9
3,642,563 + +0.8
3,642,564 - +1.5

Or see this region's nucleotide sequence