Strain Fitness in Pantoea sp. MT58 around IAI47_16810

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,559,781	+				+0.0
3,559,781	+				+0.6
3,559,782	-				-0.3
3,559,830	+				-1.0
3,559,845	-				+0.6
3,559,845	-				-0.7
3,559,845	-				-0.4
3,559,851	+				-1.3
3,559,851	+				+0.9
3,559,864	+				-0.5
3,559,864	+				+0.7
3,559,864	+				-0.9
3,559,864	+				+1.1
3,559,864	+				-1.2
3,559,864	+				-1.8
3,559,864	+				-0.5
3,559,924	-				+0.7
3,559,924	-				-0.2
3,559,924	-				-2.1
3,559,984	+		IAI47_16810	0.13	-0.9
3,559,985	-		IAI47_16810	0.13	-0.2
3,560,037	+		IAI47_16810	0.17	-0.3
3,560,037	+		IAI47_16810	0.17	-0.3
3,560,038	-		IAI47_16810	0.17	+0.7
3,560,070	-		IAI47_16810	0.20	-1.6
3,560,072	+		IAI47_16810	0.20	-0.3
3,560,072	+		IAI47_16810	0.20	-1.5
3,560,072	+		IAI47_16810	0.20	-1.2
3,560,072	+		IAI47_16810	0.20	-2.0
3,560,073	-		IAI47_16810	0.20	-1.0
3,560,073	-		IAI47_16810	0.20	-0.9
3,560,077	+		IAI47_16810	0.20	-0.5
3,560,077	+		IAI47_16810	0.20	-0.2
3,560,077	+		IAI47_16810	0.20	-1.4
3,560,077	+		IAI47_16810	0.20	+0.0
3,560,077	+		IAI47_16810	0.20	-1.7
3,560,077	+		IAI47_16810	0.20	-0.4
3,560,077	+		IAI47_16810	0.20	+0.1
3,560,077	+		IAI47_16810	0.20	-0.6
3,560,077	+		IAI47_16810	0.20	-1.3
3,560,078	-		IAI47_16810	0.21	+0.9
3,560,078	-		IAI47_16810	0.21	+0.4
3,560,078	-		IAI47_16810	0.21	+0.5
3,560,078	-		IAI47_16810	0.21	-0.7
3,560,095	+		IAI47_16810	0.22	-0.1
3,560,096	-		IAI47_16810	0.22	-1.1
3,560,096	-		IAI47_16810	0.22	-0.8
3,560,096	-		IAI47_16810	0.22	-2.1
3,560,098	+		IAI47_16810	0.22	-1.4
3,560,099	-		IAI47_16810	0.22	-2.3
3,560,099	-		IAI47_16810	0.22	-0.6
3,560,113	+		IAI47_16810	0.23	-1.4
3,560,114	-		IAI47_16810	0.24	-1.3
3,560,152	+		IAI47_16810	0.27	+2.5
3,560,212	+		IAI47_16810	0.32	-0.7
3,560,213	-		IAI47_16810	0.32	-0.2
3,560,220	-		IAI47_16810	0.32	-2.2
3,560,255	+		IAI47_16810	0.35	-1.2
3,560,255	+		IAI47_16810	0.35	-1.0
3,560,256	-		IAI47_16810	0.35	-0.7
3,560,312	-		IAI47_16810	0.40	-0.8
3,560,366	+		IAI47_16810	0.44	-1.9
3,560,410	+		IAI47_16810	0.48	-0.1
3,560,463	-		IAI47_16810	0.52	-1.8
3,560,472	-		IAI47_16810	0.53	+1.3
3,560,489	-		IAI47_16810	0.54	-2.1
3,560,491	+		IAI47_16810	0.55	-1.0
3,560,492	-		IAI47_16810	0.55	-0.6
3,560,571	-		IAI47_16810	0.61	-0.3
3,560,571	-		IAI47_16810	0.61	+0.1
3,560,579	-		IAI47_16810	0.62	-0.9
3,560,588	+		IAI47_16810	0.63	-1.1
3,560,589	-		IAI47_16810	0.63	+0.6
3,560,633	-				+0.9
3,560,635	+		IAI47_16810	0.67	-0.5
3,560,635	+		IAI47_16810	0.67	+0.8
3,560,641	-		IAI47_16810	0.67	-0.2
3,560,641	-		IAI47_16810	0.67	-1.2
3,560,641	-		IAI47_16810	0.67	-0.8
3,560,649	+		IAI47_16810	0.68	-1.7
3,560,665	+		IAI47_16810	0.69	-0.1
3,560,665	+		IAI47_16810	0.69	-1.0
3,560,666	-		IAI47_16810	0.69	+0.1
3,560,666	-		IAI47_16810	0.69	-0.5
3,560,692	+		IAI47_16810	0.71	-0.1
3,560,692	+		IAI47_16810	0.71	-1.1
3,560,693	-		IAI47_16810	0.71	+0.3
3,560,696	+		IAI47_16810	0.72	-0.3
3,560,773	+		IAI47_16810	0.78	-0.9
3,560,773	+		IAI47_16810	0.78	-0.7
3,560,775	+		IAI47_16810	0.78	-3.2
3,560,846	+		IAI47_16810	0.84	+0.2
3,560,847	-		IAI47_16810	0.84	+0.0
3,560,867	-		IAI47_16810	0.86	-2.1
3,560,885	-		IAI47_16810	0.87	-0.3
3,560,885	-		IAI47_16810	0.87	-1.2
3,560,914	+		IAI47_16810	0.90	-2.2
3,560,915	-		IAI47_16810	0.90	-0.6
3,560,915	-		IAI47_16810	0.90	-1.0
3,560,918	-		IAI47_16810	0.90	-1.8
3,560,949	-				+1.1
3,560,962	-				-0.7
3,560,970	-				-1.2
3,560,974	+				-1.2
3,560,978	-				-0.7
3,560,992	+				-1.6
3,561,006	-				+0.3
3,561,045	+				-1.1
3,561,045	+				-2.5
3,561,095	+				-0.2
3,561,096	-				+0.2
3,561,168	+				-0.5
3,561,169	-				-0.7
3,561,169	-				-1.4
3,561,171	+				+0.5
3,561,172	-				-0.7
3,561,182	-				-0.2
3,561,203	-		IAI47_16815	0.12	+0.7
3,561,203	-		IAI47_16815	0.12	-0.1
3,561,260	+		IAI47_16815	0.24	-2.6
3,561,302	+		IAI47_16815	0.32	+2.6
3,561,302	+		IAI47_16815	0.32	+0.3
3,561,302	+		IAI47_16815	0.32	+4.6
3,561,303	-		IAI47_16815	0.32	+0.1
3,561,303	-		IAI47_16815	0.32	-0.8
3,561,332	-		IAI47_16815	0.38	+0.1
3,561,338	+		IAI47_16815	0.39	-0.6
3,561,419	+		IAI47_16815	0.55	-1.4
3,561,419	+		IAI47_16815	0.55	+0.3
3,561,512	+		IAI47_16815	0.74	+0.8
3,561,513	-		IAI47_16815	0.74	-1.8
3,561,513	-		IAI47_16815	0.74	-2.4
3,561,513	-		IAI47_16815	0.74	+0.2
3,561,547	+		IAI47_16815	0.81	+0.5
3,561,554	+		IAI47_16815	0.82	-1.6
3,561,554	+		IAI47_16815	0.82	-0.9
3,561,554	+		IAI47_16815	0.82	+0.2
3,561,554	+		IAI47_16815	0.82	+0.5
3,561,555	-		IAI47_16815	0.82	-1.0
3,561,555	-		IAI47_16815	0.82	-0.6
3,561,578	-		IAI47_16815	0.87	-0.1
3,561,578	-		IAI47_16815	0.87	+0.9
3,561,578	-		IAI47_16815	0.87	+1.0
3,561,598	+				+0.5
3,561,598	+				+0.6
3,561,599	-				-0.2
3,561,599	-				-0.1
3,561,631	+				-0.8
3,561,631	+				-0.7
3,561,631	+				-0.1
3,561,632	-				+0.8
3,561,640	-				+1.9
3,561,669	+				+0.3
3,561,669	+				-1.2
3,561,670	-				+0.6
3,561,670	-				-1.8
3,561,671	+				-1.8
3,561,671	+				-1.1
3,561,671	+				-1.1
3,561,671	+				-2.7
3,561,671	+				+0.7
3,561,671	+				-0.9
3,561,671	+				-1.7
3,561,671	+				-0.2
3,561,672	-				-0.4
3,561,672	-				-1.3
3,561,672	-				+1.2
3,561,672	-				-0.3
3,561,672	-				-1.6
3,561,672	-				+3.0
3,561,709	+				+0.1
3,561,709	+				-0.1
3,561,748	+				-0.2
3,561,774	+		IAI47_16820	0.12	-2.1
3,561,775	-		IAI47_16820	0.13	-0.5
3,561,784	-		IAI47_16820	0.14	-0.2
3,561,784	-		IAI47_16820	0.14	-0.8
3,561,808	+		IAI47_16820	0.17	-0.8
3,561,808	-		IAI47_16820	0.17	+0.3
3,561,809	-		IAI47_16820	0.17	+0.1
3,561,812	+		IAI47_16820	0.17	+0.8
3,561,812	+		IAI47_16820	0.17	-0.2
3,561,812	+		IAI47_16820	0.17	+2.6
3,561,812	+		IAI47_16820	0.17	-0.9
3,561,813	-		IAI47_16820	0.18	-1.1
3,561,813	-		IAI47_16820	0.18	-0.1
3,561,854	+		IAI47_16820	0.23	+0.5
3,561,855	-		IAI47_16820	0.23	-0.8
3,561,855	-		IAI47_16820	0.23	-1.6
3,561,855	-		IAI47_16820	0.23	+0.0
3,561,855	-		IAI47_16820	0.23	+0.5
3,561,881	+		IAI47_16820	0.27	-0.1
3,561,881	+		IAI47_16820	0.27	+0.2
3,561,882	-		IAI47_16820	0.27	+0.8
3,561,882	-		IAI47_16820	0.27	-1.1
3,561,882	-		IAI47_16820	0.27	-1.3
3,561,926	+		IAI47_16820	0.32	-1.5
3,561,926	+		IAI47_16820	0.32	-0.4
3,561,926	+		IAI47_16820	0.32	-1.3
3,561,926	+		IAI47_16820	0.32	-0.1
3,561,926	+		IAI47_16820	0.32	+0.1
3,561,927	-		IAI47_16820	0.33	+1.0
3,561,927	-		IAI47_16820	0.33	+0.3
3,561,927	-		IAI47_16820	0.33	+0.7
3,561,927	-		IAI47_16820	0.33	+0.1
3,561,927	-		IAI47_16820	0.33	+0.1
3,561,927	-		IAI47_16820	0.33	-0.2
3,562,025	+		IAI47_16820	0.45	-1.4
3,562,026	-		IAI47_16820	0.46	-0.1
3,562,026	-		IAI47_16820	0.46	-0.7
3,562,026	-		IAI47_16820	0.46	-0.1