Strain Fitness in Pantoea sp. MT58 around IAI47_15475

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15465 and IAI47_15470 are separated by 3 nucleotidesIAI47_15470 and IAI47_15475 are separated by 3 nucleotidesIAI47_15475 and IAI47_15480 are separated by 152 nucleotides IAI47_15465: IAI47_15465 - lipid-A-disaccharide synthase, at 3,257,431 to 3,258,579 _15465 IAI47_15470: IAI47_15470 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 3,258,583 to 3,259,371 _15470 IAI47_15475: IAI47_15475 - 3-hydroxyacyl-ACP dehydratase FabZ, at 3,259,375 to 3,259,830 _15475 IAI47_15480: IAI47_15480 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 3,259,983 to 3,261,008 _15480 Position (kb) 3259 3260Strain fitness (log2 ratio) -2 -1 0 1 2at 3259.913 kb on - strandat 3259.913 kb on - strandat 3259.913 kb on - strandat 3259.913 kb on - strandat 3259.913 kb on - strandat 3259.917 kb on - strandat 3259.917 kb on - strandat 3259.917 kb on - strandat 3259.942 kb on - strandat 3259.951 kb on - strandat 3259.951 kb on - strandat 3259.951 kb on - strandat 3259.954 kb on - strandat 3259.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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3,259,913 - +1.6
3,259,913 - -2.5
3,259,913 - +1.8
3,259,913 - -2.1
3,259,913 - +1.9
3,259,917 - +0.6
3,259,917 - +0.2
3,259,917 - +0.9
3,259,942 - +1.5
3,259,951 - -1.0
3,259,951 - +1.4
3,259,951 - +1.8
3,259,954 - +2.3
3,259,954 - +1.3

Or see this region's nucleotide sequence