Strain Fitness in Pantoea sp. MT58 around IAI47_08065

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,703,096	+		IAI47_08060	0.24	+0.0
1,703,096	+		IAI47_08060	0.24	-0.7
1,703,096	+		IAI47_08060	0.24	-0.7
1,703,096	+		IAI47_08060	0.24	-0.1
1,703,096	+		IAI47_08060	0.24	+1.3
1,703,097	-		IAI47_08060	0.24	-1.5
1,703,097	-		IAI47_08060	0.24	+0.3
1,703,097	-		IAI47_08060	0.24	-1.5
1,703,097	-		IAI47_08060	0.24	-1.6
1,703,098	+		IAI47_08060	0.24	+4.2
1,703,098	+		IAI47_08060	0.24	+1.1
1,703,098	+		IAI47_08060	0.24	-0.5
1,703,099	-		IAI47_08060	0.25	-0.3
1,703,099	-		IAI47_08060	0.25	-0.5
1,703,099	-		IAI47_08060	0.25	+3.1
1,703,099	-		IAI47_08060	0.25	+2.3
1,703,099	-		IAI47_08060	0.25	-0.5
1,703,143	+		IAI47_08060	0.29	-2.1
1,703,143	+		IAI47_08060	0.29	+2.1
1,703,143	+		IAI47_08060	0.29	-1.2
1,703,144	-		IAI47_08060	0.29	+0.8
1,703,144	-		IAI47_08060	0.29	-0.2
1,703,144	-		IAI47_08060	0.29	-0.1
1,703,144	-		IAI47_08060	0.29	-0.5
1,703,183	-		IAI47_08060	0.32	+0.5
1,703,205	+		IAI47_08060	0.34	-1.5
1,703,205	+		IAI47_08060	0.34	-0.1
1,703,205	+		IAI47_08060	0.34	+0.5
1,703,205	+		IAI47_08060	0.34	-0.6
1,703,206	-		IAI47_08060	0.34	-1.0
1,703,206	-		IAI47_08060	0.34	+0.5
1,703,206	-		IAI47_08060	0.34	-0.8
1,703,215	+		IAI47_08060	0.35	-0.6
1,703,271	+		IAI47_08060	0.40	-1.4
1,703,271	+				+1.3
1,703,271	+		IAI47_08060	0.40	-1.7
1,703,271	+		IAI47_08060	0.40	+0.1
1,703,271	+		IAI47_08060	0.40	+0.3
1,703,271	+		IAI47_08060	0.40	-0.5
1,703,271	+		IAI47_08060	0.40	-0.0
1,703,271	+		IAI47_08060	0.40	+0.9
1,703,272	-		IAI47_08060	0.40	-1.7
1,703,272	-		IAI47_08060	0.40	-1.4
1,703,272	-		IAI47_08060	0.40	+0.1
1,703,272	-		IAI47_08060	0.40	-0.2
1,703,272	-		IAI47_08060	0.40	-0.7
1,703,274	+		IAI47_08060	0.40	+1.3
1,703,274	+		IAI47_08060	0.40	+1.3
1,703,311	-		IAI47_08060	0.44	-0.8
1,703,312	+		IAI47_08060	0.44	-0.1
1,703,321	+		IAI47_08060	0.45	-1.0
1,703,321	+		IAI47_08060	0.45	-1.7
1,703,321	+		IAI47_08060	0.45	+1.4
1,703,329	+		IAI47_08060	0.45	+0.8
1,703,329	+		IAI47_08060	0.45	+1.5
1,703,330	-		IAI47_08060	0.46	+0.3
1,703,330	-		IAI47_08060	0.46	-0.7
1,703,330	-		IAI47_08060	0.46	-0.7
1,703,330	-		IAI47_08060	0.46	+0.1
1,703,363	-		IAI47_08060	0.49	-0.3
1,703,363	-		IAI47_08060	0.49	-1.7
1,703,464	+		IAI47_08060	0.58	-0.8
1,703,465	-		IAI47_08060	0.58	+2.3
1,703,465	-		IAI47_08060	0.58	+1.1
1,703,465	-		IAI47_08060	0.58	-2.3
1,703,465	-		IAI47_08060	0.58	-1.4
1,703,465	-		IAI47_08060	0.58	+0.0
1,703,467	+		IAI47_08060	0.58	+0.3
1,703,467	+		IAI47_08060	0.58	-0.5
1,703,467	+		IAI47_08060	0.58	+0.9
1,703,467	+		IAI47_08060	0.58	-0.4
1,703,468	-		IAI47_08060	0.58	+1.5
1,703,468	-		IAI47_08060	0.58	+0.2
1,703,492	+		IAI47_08060	0.60	+0.1
1,703,492	+		IAI47_08060	0.60	-1.7
1,703,493	-		IAI47_08060	0.60	-0.9
1,703,530	+		IAI47_08060	0.64	-0.1
1,703,542	+		IAI47_08060	0.65	+1.9
1,703,554	+		IAI47_08060	0.66	+1.3
1,703,554	+		IAI47_08060	0.66	-1.5
1,703,555	-		IAI47_08060	0.66	-1.2
1,703,555	-		IAI47_08060	0.66	-0.4
1,703,585	+		IAI47_08060	0.69	-0.8
1,703,585	+		IAI47_08060	0.69	-1.0
1,703,586	-		IAI47_08060	0.69	+2.0
1,703,598	+		IAI47_08060	0.70	+0.3
1,703,624	-		IAI47_08060	0.72	-0.9
1,703,677	+		IAI47_08060	0.77	+1.2
1,703,677	+		IAI47_08060	0.77	+0.5
1,703,678	-		IAI47_08060	0.77	-2.9
1,703,678	-		IAI47_08060	0.77	-0.7
1,703,678	-		IAI47_08060	0.77	+0.1
1,703,678	-		IAI47_08060	0.77	-0.3
1,703,678	-		IAI47_08060	0.77	-0.5
1,703,678	-		IAI47_08060	0.77	+1.1
1,703,678	-		IAI47_08060	0.77	-0.2
1,703,682	-		IAI47_08060	0.77	+0.3
1,703,682	-		IAI47_08060	0.77	+2.6
1,703,689	+		IAI47_08060	0.78	+0.1
1,703,689	+		IAI47_08060	0.78	-0.7
1,703,689	+		IAI47_08060	0.78	+0.8
1,703,689	+		IAI47_08060	0.78	-0.7
1,703,689	+		IAI47_08060	0.78	+0.3
1,703,690	-		IAI47_08060	0.78	-0.5
1,703,690	-		IAI47_08060	0.78	-1.7
1,703,690	-		IAI47_08060	0.78	+0.7
1,703,690	-		IAI47_08060	0.78	+1.3
1,703,690	-		IAI47_08060	0.78	+1.0
1,703,690	-		IAI47_08060	0.78	-0.4
1,703,690	-		IAI47_08060	0.78	-0.2
1,703,812	+		IAI47_08060	0.89	-0.4
1,703,812	+		IAI47_08060	0.89	-1.8
1,703,812	+		IAI47_08060	0.89	-0.2
1,703,812	+		IAI47_08060	0.89	+1.7
1,703,812	+		IAI47_08060	0.89	-0.9
1,703,813	-		IAI47_08060	0.89	+0.0
1,703,841	+				+0.5
1,703,841	+				+0.0
1,703,842	-				-0.4
1,703,842	-				-0.7
1,703,853	-				-0.7
1,703,855	+				-0.8
1,703,855	+				-1.0
1,703,856	-				+0.0
1,703,856	-				+0.3
1,703,897	+				-0.7
1,703,898	-				+1.3
1,703,921	-				+0.8
1,703,921	-				-0.6
1,703,921	-				-1.1
1,703,921	-				+1.6
1,703,924	-				+0.3
1,703,940	+				-1.5
1,703,974	+				-0.5
1,703,989	+				+2.2
1,703,989	+				+0.3
1,703,994	+				+0.5
1,703,994	+				-0.2
1,703,995	-				+0.6
1,704,039	-				+1.9
1,704,070	+				+1.0
1,704,070	+				+1.1
1,704,071	-				+0.2
1,704,071	-				+0.0
1,704,071	-				-2.4
1,704,071	-				-0.7
1,704,071	-				-1.2
1,704,072	+				-1.8
1,704,072	+				-0.8
1,704,072	+				-1.1
1,704,072	+				+1.1
1,704,072	+				+2.3
1,704,072	+				+0.6
1,704,072	+				-0.5
1,704,072	+				-0.7
1,704,072	+				-1.6
1,704,073	-				-2.0
1,704,073	-				+0.3
1,704,073	-				-0.7
1,704,074	+				-2.5
1,704,074	+				-0.5
1,704,074	+				+0.6
1,704,074	+				+2.3
1,704,074	+				+2.0
1,704,074	+				-1.8
1,704,075	-				+1.0
1,704,075	-				-0.5
1,704,078	+				-0.7
1,704,078	+				+0.2
1,704,079	-				-1.6
1,704,079	-				+0.6
1,704,079	-				+1.2
1,704,192	-				-0.7
1,704,194	+				+0.7
1,704,221	-		IAI47_08065	0.12	-0.7
1,704,318	+		IAI47_08065	0.22	-0.5
1,704,346	+		IAI47_08065	0.24	-2.6
1,704,350	+		IAI47_08065	0.25	+0.8
1,704,350	+		IAI47_08065	0.25	-1.4
1,704,350	+		IAI47_08065	0.25	-2.9
1,704,399	-		IAI47_08065	0.30	-0.1
1,704,418	-		IAI47_08065	0.31	-0.8
1,704,439	+		IAI47_08065	0.33	-1.1
1,704,464	-		IAI47_08065	0.36	+2.2
1,704,539	+		IAI47_08065	0.43	-0.2
1,704,540	-		IAI47_08065	0.43	+0.0
1,704,544	-		IAI47_08065	0.44	-1.0
1,704,560	+		IAI47_08065	0.45	-1.4
1,704,561	-		IAI47_08065	0.45	-1.7
1,704,625	-		IAI47_08065	0.52	-1.9
1,704,651	-		IAI47_08065	0.54	-0.7
1,704,651	-		IAI47_08065	0.54	-0.2
1,704,712	+		IAI47_08065	0.60	+1.0
1,704,717	+		IAI47_08065	0.60	-0.5
1,704,919	-		IAI47_08065	0.80	+0.3
1,704,941	-		IAI47_08065	0.82	-0.6
1,704,972	+				+0.8
1,704,982	+		IAI47_08065	0.86	-0.1
1,705,020	+		IAI47_08065	0.90	-1.0
1,705,058	-				+3.1
1,705,074	+				-1.7
1,705,075	-				-0.6
1,705,086	-				+0.4
1,705,156	+				+0.4
1,705,169	+				-2.7
1,705,177	-				-0.4
1,705,204	+				+3.3
1,705,205	-				+1.8
1,705,237	+				-0.6
1,705,237	+				-1.0
1,705,238	-				+0.9
1,705,238	-				-0.2
1,705,251	+				-2.7
1,705,251	+				-1.6
1,705,280	+				-0.7
1,705,280	+				+1.0
1,705,281	-				-1.8
1,705,342	+				+1.8
1,705,343	-				-0.8
1,705,362	+				-0.1
1,705,385	+				-0.2
1,705,385	+				-1.1
1,705,386	-				-0.1
1,705,386	-				+2.3
1,705,390	+				-0.7
1,705,390	+				+0.8
1,705,391	-				-2.2
1,705,399	-				-0.1
1,705,422	+				-1.1
1,705,422	+				-0.5
1,705,422	+				+0.4
1,705,423	-				-0.6
1,705,457	-				+0.2
1,705,500	+				+0.8
1,705,500	+				-1.9
1,705,500	+				-1.0
1,705,500	+				+0.3
1,705,500	+				-1.1
1,705,500	+				+0.4
1,705,501	-				-2.0
1,705,501	-				+1.7
1,705,535	+				+0.0
1,705,536	-				+0.3
1,705,536	-				-0.8
1,705,542	+				+2.1
1,705,543	-				+1.3
1,705,543	-				+0.3
1,705,545	-				+0.8
1,705,614	+				-1.6
1,705,614	+				-1.1
1,705,615	-				+1.6
1,705,618	+				-1.2
1,705,618	+				+0.9
1,705,619	-				-1.0
1,705,635	-				+1.0
1,705,635	-				-0.5
1,705,750	+				-0.8
1,705,751	-				-0.4
1,705,752	+				-0.2
1,705,756	+				+0.6
1,705,756	+				-0.4
1,705,835	+				-1.8
1,705,835	+				+0.0
1,705,836	-				+0.0
1,705,836	-				+1.1
1,705,850	+				-1.5
1,705,851	-				+1.6
1,705,890	+				-0.5
1,705,908	+				+0.8
1,705,928	+				-0.3
1,705,933	+				-0.2
1,705,945	+				+0.1
1,705,946	-				-2.5
1,705,980	+				+0.0
1,705,980	+				-1.7
1,705,981	-				+0.1
1,705,984	+				+1.1
1,706,013	-				-0.2
1,706,013	-				-0.2
1,706,078	-				+1.7
1,706,083	+				-0.3
1,706,083	+				+0.5
1,706,094	-				-0.1
1,706,121	-				-1.1