Strain Fitness in Pantoea sp. MT58 around IAI47_06425

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,308,241	+				+1.3
1,308,241	+		IAI47_06420	0.47	+1.3
1,308,329	-		IAI47_06420	0.53	-1.9
1,308,473	-		IAI47_06420	0.63	-1.0
1,308,535	+		IAI47_06420	0.67	-0.5
1,308,547	+		IAI47_06420	0.68	-0.5
1,308,628	+		IAI47_06420	0.74	-0.9
1,308,628	+		IAI47_06420	0.74	+0.7
1,308,661	-		IAI47_06420	0.76	-1.6
1,308,818	-		IAI47_06420	0.87	-0.5
1,308,820	+		IAI47_06420	0.87	+0.9
1,308,821	-		IAI47_06420	0.87	-0.6
1,308,840	-		IAI47_06420	0.88	+2.3
1,309,006	+				+0.2
1,309,006	+				+0.3
1,309,006	+				+0.5
1,309,006	+				+1.9
1,309,006	+				+0.6
1,309,006	+				+0.9
1,309,006	+				+1.6
1,309,006	+				-0.8
1,309,006	+				+0.5
1,309,006	+				+1.0
1,309,007	-				-1.1
1,309,007	-				-2.2
1,309,007	-				-0.3
1,309,007	-				-0.3
1,309,007	-				-0.5
1,309,007	-				+0.5
1,309,014	+				+0.5
1,309,024	+				-2.5
1,309,105	+				+0.9
1,309,105	+				+0.5
1,309,105	+				-1.4
1,309,105	+				+0.7
1,309,105	+				+1.3
1,309,105	+				+1.3
1,309,105	+				-0.5
1,309,105	+				-0.7
1,309,105	+				-0.7
1,309,105	+				-2.0
1,309,105	+				-0.1
1,309,106	-				-0.5
1,309,106	-				-1.1
1,309,106	-				-1.0
1,309,106	-				-1.6
1,309,106	-				-1.9
1,309,106	-				-0.7
1,309,106	-				+2.7
1,309,106	-				-0.1
1,309,106	-				-0.3
1,309,106	-				-1.0
1,309,119	+				-0.3
1,309,119	+				-1.1
1,309,120	-				-0.5
1,309,120	-				-1.2
1,309,122	+				-0.9
1,309,122	+				-1.9
1,309,123	-				-1.1
1,309,123	-				+0.2
1,309,163	+				+0.3
1,309,163	+				-1.0
1,309,163	+				+0.0
1,309,164	-				-1.3
1,309,188	+		IAI47_06425	0.12	-2.5
1,309,188	+		IAI47_06425	0.12	-0.1
1,309,188	+		IAI47_06425	0.12	-1.9
1,309,188	+		IAI47_06425	0.12	-1.4
1,309,188	+		IAI47_06425	0.12	-1.3
1,309,189	-		IAI47_06425	0.12	+0.9
1,309,189	-		IAI47_06425	0.12	-0.7
1,309,242	+		IAI47_06425	0.24	+0.6
1,309,242	+		IAI47_06425	0.24	+0.1
1,309,243	-		IAI47_06425	0.24	-1.4
1,309,243	-		IAI47_06425	0.24	-1.1
1,309,243	-		IAI47_06425	0.24	+0.5
1,309,243	-		IAI47_06425	0.24	-1.9
1,309,243	-		IAI47_06425	0.24	-0.5
1,309,243	-		IAI47_06425	0.24	-2.7
1,309,243	-		IAI47_06425	0.24	-0.3
1,309,268	-		IAI47_06425	0.29	+0.5
1,309,321	-		IAI47_06425	0.41	-0.3
1,309,321	-		IAI47_06425	0.41	-2.4
1,309,321	-		IAI47_06425	0.41	-1.0
1,309,321	-		IAI47_06425	0.41	+0.6
1,309,471	+		IAI47_06425	0.73	-1.4
1,309,471	+		IAI47_06425	0.73	-2.4
1,309,471	+		IAI47_06425	0.73	-0.1
1,309,471	+		IAI47_06425	0.73	-0.1
1,309,471	+		IAI47_06425	0.73	+0.7
1,309,471	+		IAI47_06425	0.73	+0.5
1,309,471	+		IAI47_06425	0.73	-1.1
1,309,471	+		IAI47_06425	0.73	-0.9
1,309,471	+		IAI47_06425	0.73	-0.2
1,309,471	+		IAI47_06425	0.73	+0.2
1,309,472	-		IAI47_06425	0.74	+0.8
1,309,472	-		IAI47_06425	0.74	-1.0
1,309,472	-		IAI47_06425	0.74	-2.9
1,309,472	-		IAI47_06425	0.74	+0.2
1,309,506	+		IAI47_06425	0.81	-0.5
1,309,506	+		IAI47_06425	0.81	-1.8
1,309,506	+		IAI47_06425	0.81	-0.1
1,309,506	+		IAI47_06425	0.81	+0.3
1,309,507	-		IAI47_06425	0.81	+0.8
1,309,507	-		IAI47_06425	0.81	-0.5
1,309,507	-		IAI47_06425	0.81	-0.5
1,309,542	+		IAI47_06425	0.89	-1.0
1,309,542	+		IAI47_06425	0.89	-1.1
1,309,542	+		IAI47_06425	0.89	+0.3
1,309,543	-		IAI47_06425	0.89	-0.9
1,309,571	+				-0.1
1,309,571	+				-0.4
1,309,573	-				-1.5
1,309,590	+				-0.8
1,309,591	-				-2.1
1,309,656	+				-0.1
1,309,656	+				-1.1
1,309,656	+				-0.1
1,309,656	+				-1.9
1,309,657	-				-1.2
1,309,657	-				-2.1
1,309,657	-				+0.5
1,309,686	+				-1.6
1,309,687	-				-0.5
1,309,692	+				-1.1
1,309,692	+				-2.0
1,309,692	+				+0.6
1,309,692	+				-1.4
1,309,692	+				+0.4
1,309,818	+		IAI47_06430	0.12	+0.7
1,309,819	-		IAI47_06430	0.12	+0.8
1,309,819	-		IAI47_06430	0.12	+0.1
1,309,987	+		IAI47_06430	0.22	+1.6
1,309,994	-		IAI47_06430	0.22	+0.2
1,310,023	+		IAI47_06430	0.24	-1.1
1,310,023	+		IAI47_06430	0.24	-1.9
1,310,023	+		IAI47_06430	0.24	-0.8
1,310,024	-		IAI47_06430	0.24	+0.3
1,310,027	+		IAI47_06430	0.24	+0.8
1,310,028	-		IAI47_06430	0.24	-0.8
1,310,028	-		IAI47_06430	0.24	-0.3
1,310,028	-		IAI47_06430	0.24	+1.5
1,310,049	+		IAI47_06430	0.26	-0.4
1,310,050	-		IAI47_06430	0.26	+0.4
1,310,050	-		IAI47_06430	0.26	+0.9
1,310,058	+		IAI47_06430	0.26	-2.9
1,310,058	+		IAI47_06430	0.26	-1.6
1,310,058	+		IAI47_06430	0.26	-2.5
1,310,058	+		IAI47_06430	0.26	+0.7
1,310,117	+		IAI47_06430	0.30	+0.2
1,310,117	+		IAI47_06430	0.30	-3.4
1,310,117	+		IAI47_06430	0.30	-0.8
1,310,117	+		IAI47_06430	0.30	-0.5
1,310,118	-		IAI47_06430	0.30	-1.2
1,310,118	-		IAI47_06430	0.30	+0.9
1,310,118	-		IAI47_06430	0.30	+0.3
1,310,118	-		IAI47_06430	0.30	-0.0
1,310,118	-		IAI47_06430	0.30	+1.1
1,310,161	+		IAI47_06430	0.32	-0.9
1,310,161	+		IAI47_06430	0.32	-0.4
1,310,161	+		IAI47_06430	0.32	-1.9
1,310,220	+		IAI47_06430	0.36	-0.8
1,310,221	-		IAI47_06430	0.36	-0.3
1,310,241	+		IAI47_06430	0.37	-1.4
1,310,242	-		IAI47_06430	0.37	-0.2
1,310,262	-		IAI47_06430	0.38	+0.6
1,310,262	-		IAI47_06430	0.38	+0.4
1,310,301	+		IAI47_06430	0.41	-0.3
1,310,301	+		IAI47_06430	0.41	-0.0
1,310,302	-		IAI47_06430	0.41	-0.5
1,310,302	-		IAI47_06430	0.41	-0.3
1,310,302	-		IAI47_06430	0.41	+0.5
1,310,330	-		IAI47_06430	0.42	+0.5
1,310,406	+		IAI47_06430	0.47	+0.9
1,310,406	+		IAI47_06430	0.47	+0.4
1,310,406	+		IAI47_06430	0.47	+0.7
1,310,406	+		IAI47_06430	0.47	-0.1
1,310,406	+		IAI47_06430	0.47	+0.2
1,310,407	-		IAI47_06430	0.47	+0.1
1,310,407	-		IAI47_06430	0.47	+1.0
1,310,407	-		IAI47_06430	0.47	-1.4
1,310,407	-		IAI47_06430	0.47	+2.8
1,310,407	-		IAI47_06430	0.47	-1.3
1,310,407	-		IAI47_06430	0.47	+0.2
1,310,449	+		IAI47_06430	0.50	+1.2
1,310,449	+		IAI47_06430	0.50	-0.1
1,310,449	+		IAI47_06430	0.50	-1.4
1,310,450	-		IAI47_06430	0.50	+0.5
1,310,450	-		IAI47_06430	0.50	+0.1
1,310,450	-		IAI47_06430	0.50	+0.9
1,310,450	-		IAI47_06430	0.50	+0.6
1,310,450	-		IAI47_06430	0.50	-0.4
1,310,554	+		IAI47_06430	0.56	-0.8
1,310,554	+		IAI47_06430	0.56	+0.3
1,310,555	-		IAI47_06430	0.56	-1.3
1,310,555	-		IAI47_06430	0.56	+0.1
1,310,555	-		IAI47_06430	0.56	-0.4
1,310,555	-		IAI47_06430	0.56	+0.9
1,310,592	+		IAI47_06430	0.58	-0.4
1,310,592	+		IAI47_06430	0.58	-2.7
1,310,592	+		IAI47_06430	0.58	-1.3
1,310,592	+		IAI47_06430	0.58	-0.5
1,310,592	+		IAI47_06430	0.58	-0.5
1,310,592	+		IAI47_06430	0.58	-0.5