Strain Fitness in Pantoea sp. MT58 around IAI47_05665

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,188,274	-				-2.3
1,188,281	+		IAI47_05660	0.11	-0.7
1,188,281	+		IAI47_05660	0.11	-1.1
1,188,282	-		IAI47_05660	0.11	-0.6
1,188,370	-		IAI47_05660	0.22	+0.2
1,188,371	+		IAI47_05660	0.22	-2.1
1,188,371	+		IAI47_05660	0.22	-0.3
1,188,372	-		IAI47_05660	0.22	-2.2
1,188,373	+		IAI47_05660	0.22	-0.8
1,188,374	-		IAI47_05660	0.22	-1.6
1,188,378	-		IAI47_05660	0.23	-1.9
1,188,390	+		IAI47_05660	0.24	+0.2
1,188,391	-		IAI47_05660	0.24	-1.0
1,188,392	+		IAI47_05660	0.24	-1.2
1,188,392	+		IAI47_05660	0.24	-1.0
1,188,392	+		IAI47_05660	0.24	-0.7
1,188,392	+		IAI47_05660	0.24	-1.2
1,188,399	+		IAI47_05660	0.25	-0.3
1,188,399	+		IAI47_05660	0.25	+0.1
1,188,400	-		IAI47_05660	0.25	+1.1
1,188,400	-		IAI47_05660	0.25	-0.6
1,188,406	-		IAI47_05660	0.26	-2.7
1,188,477	+		IAI47_05660	0.35	+1.2
1,188,497	+		IAI47_05660	0.37	-1.2
1,188,525	+		IAI47_05660	0.41	-0.8
1,188,535	-		IAI47_05660	0.42	+0.6
1,188,558	+		IAI47_05660	0.45	-0.4
1,188,558	+		IAI47_05660	0.45	-0.3
1,188,568	-		IAI47_05660	0.46	+0.2
1,188,585	+		IAI47_05660	0.48	-1.9
1,188,586	-		IAI47_05660	0.48	-0.7
1,188,586	-		IAI47_05660	0.48	-0.4
1,188,586	-		IAI47_05660	0.48	+1.2
1,188,586	-		IAI47_05660	0.48	-1.2
1,188,655	-		IAI47_05660	0.57	-1.1
1,188,655	-		IAI47_05660	0.57	+0.2
1,188,904	-		IAI47_05660	0.87	-1.9
1,188,945	-				-0.7
1,189,006	+				-1.2
1,189,006	+				-0.1
1,189,028	-				+0.6
1,189,037	-				-0.6
1,189,080	-				-1.0
1,189,131	-				-0.5
1,189,161	-				-0.6
1,189,188	+				-0.4
1,189,225	+				+0.2
1,189,226	-				-2.0
1,189,262	+				-0.5
1,189,263	-				-2.7
1,189,294	-		IAI47_05665	0.24	-1.5
1,189,320	+		IAI47_05665	0.36	-1.4
1,189,326	+		IAI47_05665	0.38	-0.4
1,189,329	-		IAI47_05665	0.40	+0.6
1,189,329	-		IAI47_05665	0.40	-0.7
1,189,334	+		IAI47_05665	0.42	-0.0
1,189,335	-		IAI47_05665	0.42	-0.1
1,189,351	+		IAI47_05665	0.50	+0.4
1,189,389	-		IAI47_05665	0.67	-1.9
1,189,401	+		IAI47_05665	0.73	-1.0
1,189,401	+		IAI47_05665	0.73	+1.0
1,189,424	+		IAI47_05665	0.83	+1.2
1,189,424	+		IAI47_05665	0.83	-1.6
1,189,473	+				+1.3
1,189,473	+				+0.2
1,189,473	+				+0.4
1,189,474	-				-1.3
1,189,474	-				-2.9
1,189,474	-				-1.0
1,189,577	+				+3.1
1,189,578	+				-0.5
1,189,578	+				-2.0
1,189,578	+				+0.2
1,189,578	+				-0.8
1,189,579	-				-1.4
1,189,579	-				-0.1
1,189,579	-				-0.2
1,189,579	-				-0.2
1,189,598	+				+1.1
1,189,598	+				+0.3
1,189,599	-				+1.2
1,189,651	+				-1.0
1,189,666	-				-1.9
1,189,706	+				-0.8
1,189,706	+				+1.2
1,189,706	+				+0.9
1,189,707	-				+0.1
1,189,717	+				+0.2
1,189,717	+				-2.4
1,189,717	+				-2.3
1,189,717	+				+0.5
1,189,718	-				+0.2
1,189,720	+				+0.3
1,189,720	+				+2.2
1,189,720	+				+0.0
1,189,720	+				+0.1
1,189,720	+				+1.7
1,189,737	+				-0.6
1,189,738	-				-0.5
1,189,738	-				+1.0
1,189,767	+				-1.9
1,189,824	+				+0.0
1,189,825	-				+1.2
1,189,825	-				+0.5
1,189,845	-				-0.9
1,189,847	+				+1.1
1,189,856	-				+0.4
1,189,859	+				+0.8
1,189,859	+				-0.4
1,189,859	+				-0.2
1,189,859	+				+0.0
1,189,859	+				-0.3
1,189,860	-				-0.4
1,189,860	-				+0.4
1,189,860	-				-1.3
1,189,860	-				+0.5
1,189,911	+				+0.2
1,189,911	+				-0.3
1,189,912	-				+0.8
1,189,917	+				-0.1
1,189,917	+				+1.5
1,189,918	-				+0.3
1,189,934	+				-1.1
1,189,935	-				-0.0
1,189,935	-				+0.8
1,189,935	-				-0.3
1,189,958	+				-0.0
1,189,958	+				-0.6
1,189,958	+				-0.0
1,189,959	-				-0.0
1,189,968	-				-0.5
1,189,982	-				-2.7
1,189,982	-				+2.2
1,189,982	-				-0.4
1,189,984	+				-1.0
1,189,984	+				-0.8
1,189,984	+				-0.1
1,189,991	+				-1.4
1,189,992	-				+0.8
1,189,992	-				+0.1
1,189,992	-				-1.1
1,189,992	-				+0.6
1,189,993	+				+1.1
1,189,993	+				+0.4
1,189,994	-				-0.5
1,189,994	-				+0.6
1,190,001	+				+0.3
1,190,002	-				-0.3
1,190,002	-				+1.7
1,190,039	+				-2.9
1,190,039	+				+1.0
1,190,039	+				-0.6
1,190,040	-				-0.1
1,190,046	+				+0.5
1,190,046	+				+0.6
1,190,046	+				+0.1
1,190,047	-				-0.3
1,190,047	-				+0.9
1,190,047	-				+1.2
1,190,062	+				+0.8
1,190,103	+				+1.3
1,190,104	-				+2.2
1,190,104	-				-2.3
1,190,104	-				-1.5
1,190,159	+				-0.3
1,190,256	+		IAI47_05670	0.24	-1.1
1,190,257	-		IAI47_05670	0.25	-0.4
1,190,265	+		IAI47_05670	0.29	-0.3
1,190,266	-		IAI47_05670	0.29	+1.7
1,190,289	+		IAI47_05670	0.41	+1.6
1,190,331	+		IAI47_05670	0.62	-0.7
1,190,331	+		IAI47_05670	0.62	-1.6
1,190,332	-		IAI47_05670	0.62	-0.2
1,190,332	-		IAI47_05670	0.62	-1.0
1,190,332	-		IAI47_05670	0.62	+0.5
1,190,338	-		IAI47_05670	0.65	+0.2
1,190,338	-		IAI47_05670	0.65	+1.1
1,190,338	-		IAI47_05670	0.65	-2.4
1,190,338	-		IAI47_05670	0.65	-0.5
1,190,399	+				-1.2
1,190,399	+				-0.4
1,190,399	+				-1.2
1,190,400	-				-2.7
1,190,407	+				-0.4
1,190,407	+				-0.4
1,190,407	+				+0.3
1,190,408	-				-1.6
1,190,408	-				-0.2
1,190,411	+				-0.0
1,190,411	+				-0.5
1,190,411	+				+0.4
1,190,411	+				-0.2
1,190,412	-				+0.6
1,190,412	-				+0.8
1,190,412	-				-0.8
1,190,418	+				-1.1
1,190,418	+				+1.2
1,190,418	+				-1.1
1,190,419	-				+0.2
1,190,419	-				-1.9
1,190,420	+				+0.6
1,190,420	+				-1.6
1,190,420	+				-0.2
1,190,420	+				-0.3
1,190,420	+				-0.4
1,190,421	-				-1.3
1,190,451	+				-2.6