Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02395 and IAI47_02400 overlap by 11 nucleotides IAI47_02400 and IAI47_02405 are separated by 71 nucleotides
IAI47_02395: IAI47_02395 - sodium/pantothenate symporter, at 493,384 to 494,829
_02395
IAI47_02400: IAI47_02400 - YhdT family protein, at 494,819 to 495,061
_02400
IAI47_02405: IAI47_02405 - acetyl-CoA carboxylase biotin carboxylase subunit, at 495,133 to 496,482
_02405
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 493.821 kb on + strand, within IAI47_02395 at 493.822 kb on - strand, within IAI47_02395 at 493.822 kb on - strand, within IAI47_02395 at 493.885 kb on + strand, within IAI47_02395 at 493.885 kb on + strand, within IAI47_02395 at 493.885 kb on + strand, within IAI47_02395 at 493.885 kb on + strand, within IAI47_02395 at 493.885 kb on + strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.886 kb on - strand, within IAI47_02395 at 493.891 kb on - strand, within IAI47_02395 at 493.908 kb on + strand, within IAI47_02395 at 493.908 kb on + strand, within IAI47_02395 at 493.908 kb on + strand, within IAI47_02395 at 493.908 kb on + strand, within IAI47_02395 at 493.909 kb on - strand, within IAI47_02395 at 493.909 kb on - strand, within IAI47_02395 at 493.909 kb on - strand, within IAI47_02395 at 493.909 kb on - strand, within IAI47_02395 at 493.915 kb on - strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.998 kb on + strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 493.999 kb on - strand, within IAI47_02395 at 494.010 kb on + strand, within IAI47_02395 at 494.010 kb on + strand, within IAI47_02395 at 494.011 kb on - strand, within IAI47_02395 at 494.023 kb on + strand, within IAI47_02395 at 494.023 kb on + strand, within IAI47_02395 at 494.024 kb on - strand, within IAI47_02395 at 494.040 kb on + strand, within IAI47_02395 at 494.040 kb on + strand, within IAI47_02395 at 494.040 kb on + strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.041 kb on - strand, within IAI47_02395 at 494.042 kb on + strand, within IAI47_02395 at 494.043 kb on - strand, within IAI47_02395 at 494.043 kb on - strand, within IAI47_02395 at 494.043 kb on - strand, within IAI47_02395 at 494.043 kb on - strand, within IAI47_02395 at 494.064 kb on + strand, within IAI47_02395 at 494.064 kb on + strand, within IAI47_02395 at 494.065 kb on - strand, within IAI47_02395 at 494.065 kb on - strand, within IAI47_02395 at 494.127 kb on + strand, within IAI47_02395 at 494.128 kb on - strand, within IAI47_02395 at 494.128 kb on - strand, within IAI47_02395 at 494.128 kb on - strand, within IAI47_02395 at 494.128 kb on - strand, within IAI47_02395 at 494.128 kb on - strand, within IAI47_02395 at 494.315 kb on + strand, within IAI47_02395 at 494.315 kb on + strand, within IAI47_02395 at 494.316 kb on - strand, within IAI47_02395 at 494.316 kb on - strand, within IAI47_02395 at 494.326 kb on - strand, within IAI47_02395 at 494.357 kb on + strand, within IAI47_02395 at 494.357 kb on + strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.358 kb on - strand, within IAI47_02395 at 494.364 kb on + strand, within IAI47_02395 at 494.401 kb on - strand, within IAI47_02395 at 494.477 kb on + strand, within IAI47_02395 at 494.486 kb on + strand, within IAI47_02395 at 494.487 kb on - strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.514 kb on + strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.515 kb on - strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.520 kb on + strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.521 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.558 kb on - strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.584 kb on + strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.585 kb on - strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.599 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.615 kb on + strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.616 kb on - strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.619 kb on + strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.620 kb on - strand, within IAI47_02395 at 494.622 kb on - strand, within IAI47_02395 at 494.622 kb on - strand, within IAI47_02395 at 494.661 kb on + strand, within IAI47_02395 at 494.661 kb on + strand, within IAI47_02395 at 494.662 kb on - strand, within IAI47_02395 at 494.662 kb on - strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.663 kb on + strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.664 kb on - strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.670 kb on + strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.671 kb on - strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.673 kb on + strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.674 kb on - strand, within IAI47_02395 at 494.723 kb on + strand at 494.723 kb on + strand at 494.723 kb on + strand at 494.723 kb on + strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.724 kb on - strand at 494.754 kb on + strand at 494.754 kb on + strand at 494.755 kb on - strand at 494.767 kb on + strand at 494.768 kb on - strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.795 kb on + strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.796 kb on - strand at 494.814 kb on + strand at 494.833 kb on + strand at 494.834 kb on - strand at 495.034 kb on + strand, within IAI47_02400 at 495.035 kb on - strand, within IAI47_02400 at 495.035 kb on - strand, within IAI47_02400 at 495.044 kb on + strand at 495.044 kb on + strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.045 kb on - strand at 495.046 kb on + strand at 495.046 kb on + strand at 495.047 kb on - strand at 495.047 kb on - strand at 495.047 kb on - strand at 495.072 kb on + strand at 495.073 kb on - strand at 495.103 kb on + strand at 495.118 kb on + strand at 495.134 kb on + strand at 495.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 493,821 + IAI47_02395 0.30 -1.0 493,822 - IAI47_02395 0.30 +1.1 493,822 - IAI47_02395 0.30 -0.4 493,885 + IAI47_02395 0.35 +1.7 493,885 + IAI47_02395 0.35 -0.6 493,885 + IAI47_02395 0.35 +4.8 493,885 + IAI47_02395 0.35 -1.1 493,885 + IAI47_02395 0.35 -0.6 493,886 - IAI47_02395 0.35 +1.3 493,886 - IAI47_02395 0.35 +1.6 493,886 - IAI47_02395 0.35 -0.8 493,886 - IAI47_02395 0.35 -0.9 493,886 - IAI47_02395 0.35 +1.8 493,886 - IAI47_02395 0.35 -0.4 493,891 - IAI47_02395 0.35 -0.9 493,908 + IAI47_02395 0.36 -0.8 493,908 + IAI47_02395 0.36 +0.3 493,908 + IAI47_02395 0.36 +0.5 493,908 + IAI47_02395 0.36 -0.2 493,909 - IAI47_02395 0.36 +0.7 493,909 - IAI47_02395 0.36 +0.3 493,909 - IAI47_02395 0.36 +0.1 493,909 - IAI47_02395 0.36 -1.1 493,915 - IAI47_02395 0.37 -0.9 493,998 + IAI47_02395 0.42 -0.9 493,998 + IAI47_02395 0.42 -0.9 493,998 + IAI47_02395 0.42 +3.1 493,998 + IAI47_02395 0.42 +1.9 493,998 + IAI47_02395 0.42 -2.1 493,998 + IAI47_02395 0.42 -0.6 493,999 - IAI47_02395 0.43 -1.2 493,999 - IAI47_02395 0.43 +0.9 493,999 - IAI47_02395 0.43 +1.3 493,999 - IAI47_02395 0.43 -3.4 493,999 - IAI47_02395 0.43 -1.4 493,999 - IAI47_02395 0.43 +0.3 493,999 - IAI47_02395 0.43 +2.6 493,999 - IAI47_02395 0.43 +1.3 493,999 - IAI47_02395 0.43 -0.5 493,999 - IAI47_02395 0.43 -0.2 494,010 + IAI47_02395 0.43 -3.0 494,010 + IAI47_02395 0.43 +0.3 494,011 - IAI47_02395 0.43 +2.0 494,023 + IAI47_02395 0.44 -2.4 494,023 + IAI47_02395 0.44 -1.8 494,024 - IAI47_02395 0.44 +2.4 494,040 + IAI47_02395 0.45 +0.3 494,040 + IAI47_02395 0.45 +0.0 494,040 + IAI47_02395 0.45 -1.1 494,041 - IAI47_02395 0.45 -1.6 494,041 - IAI47_02395 0.45 -1.0 494,041 - IAI47_02395 0.45 +0.7 494,041 - IAI47_02395 0.45 +1.7 494,041 - IAI47_02395 0.45 -0.2 494,041 - IAI47_02395 0.45 -0.3 494,041 - IAI47_02395 0.45 +2.1 494,042 + IAI47_02395 0.46 +0.1 494,043 - IAI47_02395 0.46 -1.8 494,043 - IAI47_02395 0.46 -0.9 494,043 - IAI47_02395 0.46 -0.6 494,043 - IAI47_02395 0.46 -0.3 494,064 + IAI47_02395 0.47 -0.4 494,064 + IAI47_02395 0.47 +1.4 494,065 - IAI47_02395 0.47 +1.4 494,065 - IAI47_02395 0.47 -0.0 494,127 + IAI47_02395 0.51 -0.2 494,128 - IAI47_02395 0.51 +0.5 494,128 - IAI47_02395 0.51 +0.6 494,128 - IAI47_02395 0.51 -1.6 494,128 - IAI47_02395 0.51 -0.0 494,128 - IAI47_02395 0.51 -0.5 494,315 + IAI47_02395 0.64 -0.1 494,315 + IAI47_02395 0.64 +1.2 494,316 - IAI47_02395 0.64 -0.4 494,316 - IAI47_02395 0.64 -0.4 494,326 - IAI47_02395 0.65 -0.8 494,357 + IAI47_02395 0.67 -1.7 494,357 + IAI47_02395 0.67 -1.0 494,358 - IAI47_02395 0.67 +1.7 494,358 - IAI47_02395 0.67 -1.0 494,358 - IAI47_02395 0.67 +0.1 494,358 - IAI47_02395 0.67 -0.7 494,364 + IAI47_02395 0.68 -2.3 494,401 - IAI47_02395 0.70 +0.0 494,477 + IAI47_02395 0.76 -0.3 494,486 + IAI47_02395 0.76 -0.1 494,487 - IAI47_02395 0.76 -1.3 494,514 + IAI47_02395 0.78 -0.4 494,514 + IAI47_02395 0.78 -1.0 494,514 + IAI47_02395 0.78 -0.8 494,514 + IAI47_02395 0.78 -0.3 494,514 + IAI47_02395 0.78 +1.0 494,515 - IAI47_02395 0.78 -0.1 494,515 - IAI47_02395 0.78 +1.5 494,515 - IAI47_02395 0.78 -1.2 494,515 - IAI47_02395 0.78 +0.2 494,515 - IAI47_02395 0.78 -0.1 494,520 + IAI47_02395 0.79 +0.1 494,520 + IAI47_02395 0.79 -1.3 494,520 + IAI47_02395 0.79 +0.1 494,521 - IAI47_02395 0.79 -1.6 494,521 - IAI47_02395 0.79 +0.4 494,521 - IAI47_02395 0.79 -0.4 494,521 - IAI47_02395 0.79 +3.1 494,558 - IAI47_02395 0.81 -1.5 494,558 - IAI47_02395 0.81 -0.3 494,558 - IAI47_02395 0.81 +1.0 494,584 + IAI47_02395 0.83 -2.0 494,584 + IAI47_02395 0.83 +0.0 494,584 + IAI47_02395 0.83 +1.0 494,584 + IAI47_02395 0.83 -0.5 494,584 + IAI47_02395 0.83 -0.0 494,585 - IAI47_02395 0.83 -1.6 494,585 - IAI47_02395 0.83 +2.1 494,585 - IAI47_02395 0.83 +1.7 494,599 + IAI47_02395 0.84 +1.1 494,599 + IAI47_02395 0.84 -0.5 494,599 + IAI47_02395 0.84 -1.3 494,599 + IAI47_02395 0.84 +0.5 494,599 + IAI47_02395 0.84 -0.5 494,599 + IAI47_02395 0.84 -0.7 494,599 + IAI47_02395 0.84 -1.6 494,615 + IAI47_02395 0.85 -1.0 494,615 + IAI47_02395 0.85 -0.0 494,615 + IAI47_02395 0.85 -1.0 494,615 + IAI47_02395 0.85 -0.2 494,615 + IAI47_02395 0.85 -0.0 494,616 - IAI47_02395 0.85 -0.5 494,616 - IAI47_02395 0.85 +2.2 494,616 - IAI47_02395 0.85 +0.0 494,616 - IAI47_02395 0.85 +0.4 494,616 - IAI47_02395 0.85 -2.8 494,619 + IAI47_02395 0.85 -0.5 494,619 + IAI47_02395 0.85 +2.1 494,619 + IAI47_02395 0.85 +2.7 494,620 - IAI47_02395 0.85 -0.0 494,620 - IAI47_02395 0.85 -2.7 494,620 - IAI47_02395 0.85 +1.3 494,620 - IAI47_02395 0.85 -0.0 494,620 - IAI47_02395 0.85 -0.6 494,620 - IAI47_02395 0.85 -0.5 494,620 - IAI47_02395 0.85 -2.3 494,622 - IAI47_02395 0.86 +0.6 494,622 - IAI47_02395 0.86 -0.7 494,661 + IAI47_02395 0.88 -0.8 494,661 + IAI47_02395 0.88 -0.6 494,662 - IAI47_02395 0.88 +1.7 494,662 - IAI47_02395 0.88 -0.8 494,663 + IAI47_02395 0.88 -0.5 494,663 + IAI47_02395 0.88 +1.4 494,663 + IAI47_02395 0.88 +0.8 494,663 + IAI47_02395 0.88 -1.7 494,663 + IAI47_02395 0.88 -0.5 494,663 + IAI47_02395 0.88 -2.1 494,663 + IAI47_02395 0.88 -0.7 494,663 + IAI47_02395 0.88 +0.4 494,663 + IAI47_02395 0.88 +0.5 494,663 + IAI47_02395 0.88 -1.1 494,663 + IAI47_02395 0.88 +0.1 494,663 + IAI47_02395 0.88 +0.5 494,663 + IAI47_02395 0.88 -0.9 494,663 + IAI47_02395 0.88 -0.3 494,663 + IAI47_02395 0.88 +0.1 494,663 + IAI47_02395 0.88 -0.5 494,663 + IAI47_02395 0.88 -0.3 494,663 + IAI47_02395 0.88 -0.7 494,664 - IAI47_02395 0.89 -0.1 494,664 - IAI47_02395 0.89 +1.4 494,664 - IAI47_02395 0.89 -0.5 494,664 - IAI47_02395 0.89 -0.3 494,664 - IAI47_02395 0.89 +1.9 494,664 - IAI47_02395 0.89 +0.0 494,664 - IAI47_02395 0.89 -0.4 494,670 + IAI47_02395 0.89 +0.1 494,670 + IAI47_02395 0.89 -0.1 494,670 + IAI47_02395 0.89 -1.1 494,670 + IAI47_02395 0.89 -1.0 494,670 + IAI47_02395 0.89 -1.0 494,670 + IAI47_02395 0.89 -0.2 494,670 + IAI47_02395 0.89 -0.8 494,671 - IAI47_02395 0.89 +0.9 494,671 - IAI47_02395 0.89 +0.5 494,671 - IAI47_02395 0.89 -0.7 494,671 - IAI47_02395 0.89 +0.5 494,671 - IAI47_02395 0.89 +2.0 494,671 - IAI47_02395 0.89 -0.1 494,673 + IAI47_02395 0.89 -0.7 494,673 + IAI47_02395 0.89 +1.3 494,673 + IAI47_02395 0.89 +1.0 494,673 + IAI47_02395 0.89 -0.9 494,674 - IAI47_02395 0.89 +0.6 494,674 - IAI47_02395 0.89 -2.0 494,674 - IAI47_02395 0.89 +0.1 494,674 - IAI47_02395 0.89 -1.8 494,723 + -0.3 494,723 + +1.3 494,723 + +0.3 494,723 + -1.1 494,724 - -0.1 494,724 - +2.1 494,724 - -0.3 494,724 - -1.6 494,754 + -0.2 494,754 + +0.5 494,755 - -1.1 494,767 + -1.6 494,768 - +3.9 494,795 + -2.2 494,795 + -0.5 494,795 + -1.2 494,795 + -2.8 494,795 + -0.5 494,796 - -1.0 494,796 - -2.4 494,796 - +2.2 494,796 - -0.7 494,814 + -0.7 494,833 + +3.4 494,834 - +0.1 495,034 + IAI47_02400 0.88 -1.0 495,035 - IAI47_02400 0.89 -1.4 495,035 - IAI47_02400 0.89 -0.3 495,044 + +0.6 495,044 + -0.0 495,045 - -0.3 495,045 - -0.7 495,045 - +0.4 495,045 - +0.6 495,046 + -0.0 495,046 + +1.6 495,047 - -0.9 495,047 - +3.2 495,047 - -0.1 495,072 + -0.4 495,073 - +2.2 495,103 + -0.5 495,118 + +2.0 495,134 + +1.1 495,135 - -0.7
Or see this region's nucleotide sequence