Experiment: D-Glucose (C) with ammonium chloride; anaerobic; 3 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21725 and HSERO_RS21730 overlap by 4 nucleotides HSERO_RS21730 and HSERO_RS21735 are separated by 41 nucleotides HSERO_RS21735 and HSERO_RS21740 are separated by 134 nucleotides
HSERO_RS21725: HSERO_RS21725 - polyketide cyclase, at 4,974,984 to 4,975,310
_RS21725
HSERO_RS21730: HSERO_RS21730 - short-chain dehydrogenase, at 4,975,307 to 4,976,089
_RS21730
HSERO_RS21735: HSERO_RS21735 - hypothetical protein, at 4,976,131 to 4,976,415
_RS21735
HSERO_RS21740: HSERO_RS21740 - methionine synthase, at 4,976,550 to 4,980,293
_RS21740
Position (kb) 4976
4977 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4975.147 kb on - strand, within HSERO_RS21725 at 4975.164 kb on + strand, within HSERO_RS21725 at 4975.319 kb on - strand at 4975.332 kb on - strand at 4975.358 kb on + strand at 4975.448 kb on + strand, within HSERO_RS21730 at 4975.602 kb on + strand, within HSERO_RS21730 at 4975.757 kb on + strand, within HSERO_RS21730 at 4975.819 kb on + strand, within HSERO_RS21730 at 4975.878 kb on - strand, within HSERO_RS21730 at 4975.906 kb on + strand, within HSERO_RS21730 at 4976.128 kb on + strand at 4976.136 kb on - strand at 4976.136 kb on - strand at 4976.361 kb on - strand, within HSERO_RS21735 at 4976.380 kb on - strand, within HSERO_RS21735 at 4976.843 kb on + strand at 4977.090 kb on + strand, within HSERO_RS21740 at 4977.187 kb on + strand, within HSERO_RS21740 at 4977.368 kb on + strand, within HSERO_RS21740
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) with ammonium chloride; anaerobic; 3 days remove 4,975,147 - HSERO_RS21725 0.50 +0.1 4,975,164 + HSERO_RS21725 0.55 +0.6 4,975,319 - -0.3 4,975,332 - -0.1 4,975,358 + -0.3 4,975,448 + HSERO_RS21730 0.18 +0.8 4,975,602 + HSERO_RS21730 0.38 +0.2 4,975,757 + HSERO_RS21730 0.57 -0.1 4,975,819 + HSERO_RS21730 0.65 +0.4 4,975,878 - HSERO_RS21730 0.73 -0.6 4,975,906 + HSERO_RS21730 0.77 +0.5 4,976,128 + +0.1 4,976,136 - -1.2 4,976,136 - -0.9 4,976,361 - HSERO_RS21735 0.81 +0.5 4,976,380 - HSERO_RS21735 0.87 +0.4 4,976,843 + -2.4 4,977,090 + HSERO_RS21740 0.14 -2.3 4,977,187 + HSERO_RS21740 0.17 -3.1 4,977,368 + HSERO_RS21740 0.22 -0.5
Or see this region's nucleotide sequence